Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0571.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   6.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 257 KHHLQRMIQFRS*PGDW 207
           +HH+QR  +F +   DW
Sbjct: 462 QHHIQRQDEFNAEDQDW 478


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 154 TVVFSDVLAFLLLVQL 107
           T+ F+  L F+LLVQ+
Sbjct: 81  TITFASFLLFILLVQI 96


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 346 DADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNGKEPS 459
           D D+ K      VL GG+T  P +   +++      PS
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,591
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)