Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0570.Seq
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    28   0.72 
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.2  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    26   3.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    25   6.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.7  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    25   8.9  

>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 330 QENMTYKEFILQCTEDAKKYLNSYVRDDKPKQCSFEEGSALS-NVQLPDQPAVQALRE-K 503
           +EN  YK   LQ  + A K+ ++Y + +K  + + E G  +  N +L     ++  RE K
Sbjct: 774 RENKRYKHNKLQTPKPADKFRDNYHKQNKRNREAKERGIGIKVNSELKSAVEIRKARELK 833

Query: 504 EK 509
           EK
Sbjct: 834 EK 835


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 202 FWGSMTALVLAGGFAAYAKRPRRS 273
           FW  M + +L   F AYA++ R+S
Sbjct: 64  FWDPMASQILISHFQAYARKARKS 87


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 151 TEVVPGAQCTCTRRYTDVGATLVVAGVCDGA 59
           T     A CT    YT    T  ++G C+GA
Sbjct: 765 TSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 306 DDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPKQCSFEEGSALSNVQLPDQPAV 485
           DD I     EN  Y      C+E  +  L  ++ + K  +    +G AL  +Q P+  +V
Sbjct: 118 DDTIISKQDENTYYIVTNAACSEKDEANLKKHIENWKGVELERVQGRALIAIQGPETASV 177


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 357 ILQCTEDAKKYLNSYVRDDKPKQCSFEEGSALSNVQLPDQPAVQALREKEKS 512
           ++Q  +D+K   NS+  DD  KQ + +  +  SN+++P   +      KEKS
Sbjct: 188 VVQAQKDSKD--NSW--DDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKS 235


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 359 YELFVGHVLLVRDCDNVIEPGSVD 288
           Y+L V +  L  +CDNV    +VD
Sbjct: 197 YDLGVRYATLAHNCDNVFADAAVD 220


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 282 LTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPK 422
           L I +P   DV  +A  + + YKE   Q T    KY    V   KPK
Sbjct: 473 LKIQSP--KDVKQLAQAKELAYKECFYQGTMIIGKYSGEKVETAKPK 517


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 333 ENMTYKEFILQCTEDAKKYLNSYVRDDKPKQCSFEEGSALSNVQLPDQPAVQALREKEK 509
           EN+ +KE+I +  E A ++       +K K   FE+ S +S  +L  Q      R +E+
Sbjct: 76  ENLEFKEYIAEALEVAAEHKEQQKNREK-KSSKFEQ-SGVSRDELLRQQEELLSRARER 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,588
Number of Sequences: 5004
Number of extensions: 33203
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)