Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0570.Seq
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258...    28   3.9  
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...    28   5.1  
06_03_0720 - 23858394-23858883,23860318-23860727                       27   6.8  
04_04_0223 - 23723055-23723223,23723316-23723424,23723588-237236...    27   8.9  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    27   8.9  
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540...    27   8.9  

>05_01_0329 -
           2580083-2580115,2580787-2580864,2580986-2581078,
           2581209-2581326,2583350-2583440,2585167-2585207,
           2585854-2585981,2586078-2586353,2587318-2587472,
           2587557-2587700,2587991-2588567
          Length = 577

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +3

Query: 255 KTSPEVRDWLTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPKQCSF 434
           K SP + DW + N    +  +AV + +  T +   L C E         V D      SF
Sbjct: 273 KQSPSLDDWKSANQYASNAKVAVRFVDGTTVEGHFLYCQEHYNLAFYKIVVDRSIHLPSF 332

Query: 435 EEG 443
            EG
Sbjct: 333 NEG 335


>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 243 RCLRKTSPEVRDWLTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPK 422
           RCL  T  EVRD  T+     D  +AV   E    KEF+    +     L + ++  +P 
Sbjct: 460 RCLFDTDDEVRDRATLYLQTLDGEVAVGSTEK-DVKEFLFGSFDVPLANLEASLKTYEPS 518

Query: 423 QCSFE 437
           +  F+
Sbjct: 519 EEPFD 523


>06_03_0720 - 23858394-23858883,23860318-23860727
          Length = 299

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = +3

Query: 222 PRAGGRLRCLRKTSPEVRDWLTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSY 401
           P  GG  R + +  P   + + I+ PW  D I         + +   Q TE  K  + +Y
Sbjct: 180 PPLGGEGR-IHRHPPGRTNTINIHPPW--DTINTITTIETHHNQQPPQYTEQQKP-IQAY 235

Query: 402 VRDDKPKQCSFEEGSALSNVQLPD 473
           +R DK     F +  + S    PD
Sbjct: 236 IRQDKTPDIDFRDRHSYSPTVSPD 259


>04_04_0223 -
           23723055-23723223,23723316-23723424,23723588-23723690,
           23723781-23723812,23724024-23724241,23724322-23724437,
           23725055-23725310,23725719-23725806,23725928-23726005,
           23726199-23726274,23726525-23726583,23727715-23728066
          Length = 551

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 246 CLRKTSPEVRDWLTINAPW 302
           C ++    V++W+T N PW
Sbjct: 228 CFKEFGDRVKNWITFNEPW 246


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 499 SRSA*TAGWSGSCTLDSADPSSNEHCLGLSSRT 401
           S SA TA W G+  ++S DPS      G  SR+
Sbjct: 48  SLSAATAAWVGAGNVESDDPSVRSVAAGEQSRS 80


>02_01_0722 +
           5405550-5405810,5406654-5407399,5407575-5408046,
           5408129-5408296,5408301-5408418,5408845-5409056,
           5409165-5409287,5409395-5409880,5409976-5410401
          Length = 1003

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 315 IAVAYQENMTYKEFILQCTEDA---KKYLNSYVRDDKPKQCSFEEGSALSN 458
           I VAY  ++T    ++QC +DA    KY N+ +    PKQ   E    + N
Sbjct: 226 IIVAYDPDVTGPRLLIQCIQDAAQPPKYFNASLY-SPPKQREAERHHEIRN 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,465
Number of Sequences: 37544
Number of extensions: 247105
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)