Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0570.Seq
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56932| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14) 29 2.3
SB_48929| Best HMM Match : BTB (HMM E-Value=1.4e-15) 29 2.3
SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.3
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 29 3.0
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 28 4.0
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25) 27 9.2
SB_2172| Best HMM Match : zf-CCHC (HMM E-Value=0.011) 27 9.2
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 NDQNSTTWCQY*NNTTAPSQTPATTR 89
N + +CQY N T+PS+ P TTR
Sbjct: 6 NRKKQGRYCQYYNTITSPSKIPRTTR 31
>SB_56932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 NDQNSTTWCQY*NNTTAPSQTPATTR 89
N + +CQY N T+PS+ P TTR
Sbjct: 6 NRKKQGRYCQYYNTITSPSKIPRTTR 31
>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
Length = 1242
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 447 PIPPQTSTAWACR-LGRSYSNTSWRLQCIVI*TLCRSC 337
P+P ++ CR GR Y N + C +CR C
Sbjct: 192 PVPENRKSSEKCRNCGRGYPNAGGKTSCPAYQAVCRGC 229
>SB_48929| Best HMM Match : BTB (HMM E-Value=1.4e-15)
Length = 239
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 PWFD-DVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPKQ 425
PW + DVI V ++ +FIL+ K + +V+D KP Q
Sbjct: 14 PWDESDVILVVEEQEFHVHKFILKMASPVFKAMFEHVKDSKPIQ 57
>SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 946
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 447 PIPPQTSTAWACR-LGRSYSNTSWRLQCIVI*TLCRSC 337
P+P ++ CR GR Y N + C +CR C
Sbjct: 669 PVPENRKSSEKCRNCGRGYPNAGGKTSCPAYQAVCRGC 706
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 255 KTSPEVRDWLTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPK 422
K +P RD++T+ WFD + ++ + N T KE +Q T+ N V + K K
Sbjct: 173 KVTPLERDYVTLLKEWFDRDLDLSKEVNETKKE--VQETKTKVDEANKEVHEVKGK 226
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 204 LGIYDGPRAGGRLR--CLRKTSPEVRDWLTINAPWFDDVIAVA 326
L IY P A G C RKT ++ W AP F D + +A
Sbjct: 2128 LHIYLKPHANGHKERTCWRKTLQRLKTWRKETAPKFQDSVILA 2170
>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1744
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 447 PIPPQTSTAWACR-LGRSYSNTSWRLQCIVI*TLCRSCS 334
P+P ++ CR GR Y + + C +CR C+
Sbjct: 662 PVPENRKSSEKCRNCGRGYPHAGGKTSCPAYQAVCRGCA 700
>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 237 RLRCLRKTSPEVRDWLTINAPWFDDV 314
RLRCL+ P+ R + +N P +DV
Sbjct: 1150 RLRCLKAIQPDARLQIKLNVPKREDV 1175
>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
Length = 1271
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 447 PIPPQTSTAWACR-LGRSYSNTSWRLQCIVI*TLCRSC 337
P+P ++ CR GR Y + + C +CR C
Sbjct: 185 PVPENRKSSEKCRNCGRGYPHAGGKTSCPAYQAVCRGC 222
>SB_2172| Best HMM Match : zf-CCHC (HMM E-Value=0.011)
Length = 513
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 447 PIPPQTSTAWACR-LGRSYSNTSWRLQCIVI*TLCRSC 337
P+P ++ CR GR Y + + C +CR C
Sbjct: 220 PVPENRKSSEKCRNCGRGYPHAGGKTSCPAYQAVCRGC 257
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 KTSPEVRDWLTINAPWFDDVIAVAYQENMTYKEFILQCTEDAKKYLNSYVRDDKPKQCSF 434
K +P RD++T+ W D + ++ + N T KE E K+ + ++ D+ +
Sbjct: 171 KVTPLERDYVTLLKEWVDKDLDLSKEVNETKKE----VQETKKEVQETKIKVDETNEVVH 226
Query: 435 EEGSALSNVQL-PDQPAVQALREKEK 509
+ LS + L ++ AV KE+
Sbjct: 227 KMDGKLSEMSLKAEKMAVDLASLKEE 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,248
Number of Sequences: 59808
Number of extensions: 281149
Number of successful extensions: 903
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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