Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0570.Seq
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s...    29   2.5  
At3g19710.1 68416.m02496 branched-chain amino acid aminotransfer...    27   7.5  
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ...    27   9.9  

>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
           similar to SP|P52298 20 kDa nuclear cap binding protein
           (CBP20) (NCBP interacting protein 1) {Homo sapiens};
           non-consensus AT donor splice site at exon 4, AC
           acceptor splice site at exon 5; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 257

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 369 TEDAKKYLNSYVRDDKPKQCSFEEG 443
           TEDA KY++  + DD+P +  F+ G
Sbjct: 88  TEDAVKYISGTILDDRPIRVDFDWG 112


>At3g19710.1 68416.m02496 branched-chain amino acid
           aminotransferase, putative / branched-chain amino acid
           transaminase, putative (BCAT4) similar to branched-chain
           amino acid transaminase 6 [Arabidopsis thaliana]
           GI:13810195; contains Pfam profile: PF01063
           aminotransferase class IV
          Length = 354

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 447 PIPPQTSTAWACRLGRSYSNTS 382
           PIP  T TA+AC +GR + + S
Sbjct: 155 PIPETTFTAFACPVGRYHKDNS 176


>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
           Pfam PF00023: Ankyrin repeat
          Length = 664

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 306 DDVIAVAYQENMTYKEFILQC-TEDAKKYLNSYVRDDKPKQCSFEEGSALSNVQ 464
           +++ +   QEN T  E +    TED K+ L   ++ D P++ S  E S +S  Q
Sbjct: 319 EELFSNTNQENDTESEDLGDILTEDEKRQLELALKLDSPEESSNGESSRISQKQ 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,267,606
Number of Sequences: 28952
Number of extensions: 180632
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)