Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0567.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 511  NFHGQHTDTATEITNLYYHYSD 446
            +FHGQ       +  LYYH  D
Sbjct: 1591 DFHGQWDKQTGHVAPLYYHPED 1612



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 511  NFHGQHTDTATEITNLYYHYSDIY 440
            +FHG        +  LYY+  D+Y
Sbjct: 2514 DFHGHWDKQTGHVAPLYYYPGDVY 2537


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  DYQGSLRRLEMSIEEEYL 99
           D Q  LRRLEMS+E+  L
Sbjct: 142 DNQDHLRRLEMSLEKSGL 159


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 391 QALDGATCVCQLVTSIDRCRCND 459
           Q +D  TC C L  S   C+ ND
Sbjct: 2   QYVDSYTCTCPLGFSGINCQTND 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,290
Number of Sequences: 336
Number of extensions: 2491
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)