Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0567.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.8  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    25   9.4  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 397 LDGATCVCQLVTSIDRCRCNDNTNLLFRW 483
           LD ++  CQ +   DR R +  ++ LFRW
Sbjct: 776 LDESSVTCQKINDKDRVRFSGQSSSLFRW 804


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 627 GGRAHSPPGVKWLLKPIDIYN 565
           GG  H P  V WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 434 LSIDVAVMIIQICYFGGGICVLSVKIS 514
           ++I VAVM+  IC  G  + +L +K S
Sbjct: 40  ITIPVAVMLFGICLIGTFVSLLMIKSS 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,977
Number of Sequences: 5004
Number of extensions: 38120
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)