Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0567.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 370 PSQFHATQALD-GATCVCQLVTSIDRCRCND 459
           P   H  Q LD GATCV ++   +D  +C D
Sbjct: 430 PEYKHCKQKLDNGATCVSRVSPPVDGTKCGD 460


>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +1

Query: 400 DGATCVCQ--LVTSIDRCRCNDNTNLLF---RWRY 489
           +G  C C+  L+  ID C C DN  +     RW++
Sbjct: 130 NGTVCECRNGLIVCIDNCTCRDNGTVYHNGDRWKH 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,764
Number of Sequences: 59808
Number of extensions: 320011
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)