Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0562.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58586| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_6516| Best HMM Match : DUF708 (HMM E-Value=8.5)                     30   2.1  
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   6.3  
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_58586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 410 PAIDAPTLAEVLCVSEEEEIKNVQNKEEPVSCSHYRLIFY 529
           P+I+  T+A +L   E   + N+ N+ E V  + YRL++Y
Sbjct: 24  PSIERHTVAYLLNNKETAFLTNLMNEMEDVHNTDYRLVYY 63


>SB_6516| Best HMM Match : DUF708 (HMM E-Value=8.5)
          Length = 159

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 410 PAIDAPTLAEVLCVSEEEEIKNVQNKEEPVSCSHYRLIFY 529
           P+I+  T+A +L   E   + N+ N+ E V  + YRL++Y
Sbjct: 24  PSIERHTVAYLLNNKETAFLTNLMNEMEDVHNTDYRLVYY 63


>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 248 IIPNSESVYVCGITI*M**SVTTVVT-PHMRCNNRLGVYYN 129
           +I N  S Y CG T+     V TVV  P+ +C   L ++Y+
Sbjct: 128 LITNVPSYYSCGTTLLQMYQVITVVARPYYKCTKLLQLWYD 168


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 416 IDAPTLAEVLCVSEEEEIKNVQNKEEPVSCS 508
           I+A +L E     EE  IKN++  +EP  CS
Sbjct: 72  IEADSLEENTIEGEESNIKNMETAKEPKVCS 102


>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 452 SEEEEIKNVQNKEEPVSCSHYRLIFY 529
           +EE+E KN +NKE   S S ++L+ Y
Sbjct: 187 NEEQEAKNEKNKEFITSASSWKLLSY 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,175,633
Number of Sequences: 59808
Number of extensions: 319255
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)