Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0562.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20080.1 68417.m02937 C2 domain-containing protein contains I...    29   3.9  
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ...    28   6.8  
At1g67990.1 68414.m07767 caffeoyl-CoA 3-O-methyltransferase, put...    28   6.8  
At1g67980.1 68414.m07765 caffeoyl-CoA 3-O-methyltransferase, put...    28   6.8  
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /...    27   9.0  

>At4g20080.1 68417.m02937 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 774

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 318 DGVFSRSILKTEHYKITNHSMIMNNSELRVSLRLWYYYLNVI 193
           D VFS +   ++   +T  +++   S++ +S RLWY  +NVI
Sbjct: 170 DEVFSEA-WHSDSASVTGENVVNTRSKVYLSPRLWYLRVNVI 210


>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
           protein / PEP carboxylase family protein similar to
           SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
           4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 458 EEEIKNVQNKEEPVSCSHYRLIFYKQSPNNLYKHRRGLQQDL 583
           EE+ +N+  +   +SC HYR   Y+      Y H    Q +L
Sbjct: 804 EEKWRNLMEEISGISCQHYRSTVYENPEFLSYFHEATPQAEL 845


>At1g67990.1 68414.m07767 caffeoyl-CoA 3-O-methyltransferase,
           putative similar to GI:2960356 [Populus balsamifera
           subsp. trichocarpa], GI:684942 [Medicago sativa subsp.
           sativa]
          Length = 233

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 17  FL*LFIVILAIKNSLKINIFTGYPI 91
           FL + + I+  KN+++I +FTGY +
Sbjct: 59  FLSMLVKIINAKNTIEIGVFTGYSL 83


>At1g67980.1 68414.m07765 caffeoyl-CoA 3-O-methyltransferase,
           putative similar to GI:2960356 [Populus balsamifera
           subsp. trichocarpa], GI:684942 [Medicago sativa subsp.
           sativa]
          Length = 212

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 17  FL*LFIVILAIKNSLKINIFTGYPI 91
           FL + + I+  KN+++I +FTGY +
Sbjct: 39  FLSMLVKIMNAKNTIEIGVFTGYSL 63


>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 414

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 584 ANPVEDLSCACISCWETACKKSICSVN 504
           AN   D + A ++ W+ ACK S  SVN
Sbjct: 44  ANDHRDHTKAFVAAWDKACKSSSSSVN 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,194
Number of Sequences: 28952
Number of extensions: 217457
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)