Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0561.Seq
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    91   2e-19
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    29   0.80 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    29   0.80 
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    28   1.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    28   1.8  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    27   3.2  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    27   4.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.6  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   9.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.8  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
 Frame = +3

Query: 219 QHEKRGDIR--NQAYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKI 392
           +H+K   ++  +  ++ +K+D  P+T   +T  + L LYE++  +RR+E A   LYK K 
Sbjct: 45  EHDKPFPVKLDDSVFEGYKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKK 103

Query: 393 IRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYSWAL 521
           IRGFCHL  GQEAVA G+  A+   DS+IT+YRCHG+ Y+  L
Sbjct: 104 IRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGL 146



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 31/43 (72%), Positives = 38/43 (88%)
 Frame = +2

Query: 554 RRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVXFAHKY 682
           R+ G S+GKGGSMH++ +NFYGGNGIVGAQ+PLGAG+ FA KY
Sbjct: 158 RQCGASKGKGGSMHIFAKNFYGGNGIVGAQIPLGAGIGFAQKY 200



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = +1

Query: 646 PVGSWSGLRPQVPRRRGVTFALYGDGAANQGQLLRSYNMLKLWDLPCVFVARTTVTALG 822
           P+G+  G   +   +   TFALYGDGA+NQGQ   ++NM KLW LP +F        +G
Sbjct: 189 PLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMG 247


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 186 DCTGCSDKRKIQHEKRGDIRNQAYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETA 365
           D    ++KR+++H+K+   R QA  L +  QG   S+ +  +  +K +E      ++  A
Sbjct: 476 DLDDSAEKRRVEHQKQLASRKQAEGLQRFAQGSVPSSGI-EKPTVKRFESYKRDSQLPQA 534

Query: 366 SGNL 377
            G L
Sbjct: 535 IGEL 538


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -2

Query: 762 HVVASKKLTLVGGSVSVQSERDSPSARYLWAKXT--PAPNGTCAPTIPLPP*KLRPYKCM 589
           H  +S+KL L     ++Q      + R LW + T   APN      +P P  K +    +
Sbjct: 549 HKRSSRKL-LYEDKQAIQEAHTINTKRKLWPQSTLIQAPNSDDEENVPSPSPKKKVVSPI 607

Query: 588 EPPLPREQPVLRPVSSEST 532
           +P  P  +P L  + S +T
Sbjct: 608 KPLSPSRRPPLTSLYSGTT 626


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +1

Query: 91  INLGFIEIIIDKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPTNSIN 270
           I++ F + ++D + K+  + A+F   N   K   PVV+   ++ + K   F+ KP     
Sbjct: 355 ISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKRFVSDK--IFK-KPITVNE 411

Query: 271 WIRALQHQPHSLLKMLLSCMNN 336
           W   L +Q + + +M L   NN
Sbjct: 412 W-WDLGNQVYKIRQMFLELWNN 432


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +3

Query: 450 AAMRDADSVITAYRCHGWTYSWALVCWGCSR-----S*RGAGPVAPGAREVP 590
           AA+R A      Y C  ++ SW  V  G +      + RG GP  PG+  +P
Sbjct: 124 AALRMAKVYTNKYECVAFSSSWHGVTGGAASLTFAAARRGYGPALPGSYTIP 175


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 400 PRMIFSLYRFPDAVSILRNIV 338
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -2

Query: 660  PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTPMS 508
            P P  + AP +P P   L P   +  P  +  PV  P  S   PS  TP S
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP---VPVPTAKAPPV--PAPSSEAPSVSTPRS 1254


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 576 PREQPVLRPVSSESTPSTLTPMSKSIRDN 490
           PR++P L P+S  + PST+    +  R N
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYRGN 340


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +1

Query: 121 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPTNSINWIRALQHQP 297
           +K+ K+ P     + G+  +K   P +AT      K+E  F+ +  +  +W  ++  +P
Sbjct: 5   EKLLKITPKILVIM-GSVRSKRLCPTIATWVGEMGKRETNFDYEKVDLTDWPLSMSDEP 62


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 707 LCTETEPPTRVNFFEATTC*NYGTCL 784
           LC E  P  R+ F   T C   G C+
Sbjct: 37  LCIEVNPTDRIAFISETLCIGCGICV 62


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 591 MEPPLPREQPVLRPVSSESTPSTLTPM 511
           +E P+   +PV  P  +E TP TL+P+
Sbjct: 41  LEDPVNPIRPVYTPTRTEITPVTLSPI 67


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 261 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 392
           LH L + P  ++TLT+E AL+  E    LT      E + G  Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 660 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 562
           P P    A +IPLPP   +      PP PR  P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 402 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 307
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 402 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 307
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,453
Number of Sequences: 5004
Number of extensions: 65276
Number of successful extensions: 225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)