Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0561.Seq
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      124   7e-29
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   33   0.28 
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     31   1.5  
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)               31   1.5  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 31   1.5  
SB_49213| Best HMM Match : zf-BED (HMM E-Value=2.7)                    30   2.0  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   2.0  
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19828| Best HMM Match : Death (HMM E-Value=0.00028)                 29   4.6  
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                  29   4.6  
SB_46180| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_18877| Best HMM Match : DUF758 (HMM E-Value=0)                      28   8.0  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  124 bits (300), Expect = 7e-29
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = +3

Query: 255 YKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAV 434
           Y LHK+  GP   A +T E+ L  Y Q+ I+RR+ETA+ NLYK K+IRGFCHLYSGQEA 
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEAC 61

Query: 435 AVGMRAAMRDADSVITAYRCHGWTY 509
            VGM A++   DSVITAYRCHGWTY
Sbjct: 62  CVGMEASIDKNDSVITAYRCHGWTY 86



 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = +2

Query: 554 RRTGCSRGKGGSMHLYGRNFYGGNGIVGAQVPLGAGVXFAHKYRADG 694
           R+TGC++GKGGSMH+YG  +YGGNGIVGAQVPLGAG+  AHK R +G
Sbjct: 102 RKTGCTQGKGGSMHMYGHEYYGGNGIVGAQVPLGAGIALAHKLRGNG 148



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +1

Query: 646 PVGSWSGLRPQVPRRRGVTFALYGDGAANQGQLLRSYNMLKLWDLPCVFVARTTVTALG 822
           P+G+   L  ++     +   LYGDGAANQGQL  +YNM KLW+LPC+F+       +G
Sbjct: 133 PLGAGIALAHKLRGNGRICLTLYGDGAANQGQLFETYNMAKLWNLPCIFICENNGYGMG 191


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 660 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPR-EQPVLRPVSSESTPSTLTPMSKSI 499
           P P     P +PLPP +L       PP    +QP L P  S   P   TPMS S+
Sbjct: 467 PPPPAPALPPLPLPP-ELPGSPGDSPPATSPKQPPLPPKHSNGPPLRQTPMSSSL 520


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 735  LVGGSVSVQSERDSPS--ARYLWAKXTPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 562
            L    V V ++  SP+   RY W    P  N    P IPLP  +L   +C+EP   R+  
Sbjct: 1573 LQSNPVVVDAKEVSPAHRPRYFWGNL-PGMN---RPAIPLPGDRLTLQECLEPNCGRKAR 1628

Query: 561  VLRPVSSESTPSTLTPMSKSI 499
              +  +  +  ++LT   K+I
Sbjct: 1629 FTKVQTITTNANSLTQTKKNI 1649


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 705  ERDSPSARYLWAKXTPAPNGTCAP-TIPLPP*KLRPYKCMEPPLPREQ-PVLRPVSSEST 532
            E   P    + ++ TPAP  T AP TI      + P   M P    E    + P S+E  
Sbjct: 1920 ETTLPPETTMASESTPAPESTLAPETIIASETTVAPETTMVPGTTLEPGTTITPKSTEVP 1979

Query: 531  PSTLTPMS 508
            P+T+TP S
Sbjct: 1980 PTTMTPES 1987


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = -2

Query: 750 SKKLTLVGGSVSVQSERDSPSARYLWAKXTPAPNGTCAPTIPLP-------P*KLRPYKC 592
           S K T + GS+S     D   AR       P P+ +  P+IP P       P  ++  + 
Sbjct: 547 SHKTTEINGSISTVGRPDGAVAR-------PQPHRSAEPSIPTPHTMQQGQPPAIQIKQQ 599

Query: 591 MEPPLPREQPVLRPVSSESTPSTLTPMSKS 502
            +PP     P  +P +  +TP  L   +KS
Sbjct: 600 PQPPAVEPPPEPKPKAKPATPDRLMQPTKS 629


>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 636 PTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 514
           PT  LP     PY  +E P+P  +P+ R  ++ ++ S+ +P
Sbjct: 125 PTYALPSESRLPYPHLETPVPMAEPLTREEATATSTSSTSP 165


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 657 APNGTCAPTIPLPP*KLRPYKCMEPP-LPREQPVLRPVSSESTPSTLTPM-SKSIRDNDT 484
           AP G      P PP K +   C  PP  P  +       ++++PST +P  +K++R  + 
Sbjct: 268 APAGGLVTAAPSPPDKKQSSVCHTPPKTPSSKTTPADAETKTSPSTTSPQTNKALRQKEE 327

Query: 483 R 481
           +
Sbjct: 328 K 328


>SB_49213| Best HMM Match : zf-BED (HMM E-Value=2.7)
          Length = 308

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 738 TLVGGSV-SVQSERDSPSARYLWAKXTP-APNGTCAPTIPLP 619
           T  G SV S  +ERD PSA    AK +P  PNG     +P P
Sbjct: 2   TAPGISVASFSNERDVPSANLPLAKESPVVPNGCSPANVPFP 43


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -2

Query: 750 SKKLTLVGGSVSVQSERDSPSARYLWAKXTPAPNGTCAPT-IPLPP*KLRPYKCMEPPLP 574
           S  L+LV  S+S+ S +  PS  Y      P P    +P+ + L      PYK    PLP
Sbjct: 200 STSLSLVT-SLSLVSLQAPPSYPY-----KPLPRILTSPSLVSLQASPSYPYK----PLP 249

Query: 573 REQPVLRPVSSESTPSTLTPMSKSIR 496
           R +P+LR ++S S  S   P+S S +
Sbjct: 250 RYKPLLRILTSPSLVSLQAPLSYSYK 275


>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 583 RFHAFVRTQLLWWQRDCWCAGPVGSWSGLRPQVPRRRGVT 702
           R+H    T +  WQ DC C G V     L    P   G T
Sbjct: 226 RYHDMGITHMFQWQADCLCTGNVLQGGNLVYSAPTSAGKT 265


>SB_19828| Best HMM Match : Death (HMM E-Value=0.00028)
          Length = 106

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 640 AGPVGSWSGLRPQVPRRRGVTFALYGDGAANQGQLLRSY 756
           AGPV +W GL  ++  RR   +    D A N   LL  Y
Sbjct: 32  AGPVFNWRGLATELGVRRDTCYLFETDSAENPTILLFEY 70


>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 585 PPLPREQPVLRPVSSESTPSTLTPMSKSI 499
           PP P  +PV +P S + +P +L P ++S+
Sbjct: 841 PPSPPPEPVPKPKSLDPSPQSLDPRTQSL 869


>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 1151

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 669 KXTPAPNGTCAPTIP--LPP*KL--RPYKCMEPPLPREQPVLR 553
           + +P  N T +P IP   PP K    PY CMEPP P  +  +R
Sbjct: 23  RLSPRSNSTPSPGIPSPFPPSKSPDSPY-CMEPPKPTPKESMR 64


>SB_46180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 564 PVLRPVSSESTPSTLTPMSKSIRDNDT 484
           P LRP+ + +T ST    SK  R+NDT
Sbjct: 182 PQLRPIGAAATTSTAPSNSKCGRENDT 208


>SB_18877| Best HMM Match : DUF758 (HMM E-Value=0)
          Length = 189

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 234 GDIRNQAYKLHKLDQGPATSATLTSEDALKLYEQLTILRR 353
           GD+ +Q YKL K++      A    +D +K+  +++IL R
Sbjct: 38  GDLLDQLYKLAKMEASSKKEAEKLIKDLIKIVVKISILFR 77


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -2

Query: 717  SVQSERDSPSARYLWAKXTPAPNGTCAPTIPLP---P*KLRPYKCMEPPLPREQPVLRPV 547
            + +  R +P       + TP P    + T P P   P + +P    EPP    +P   P+
Sbjct: 1090 TTEPPRTTPEPTTEPPRTTPEPTTEPSRTKPEPTTEPSRTKPEPTTEPPRTTSEPTTEPL 1149

Query: 546  SSESTPST 523
             +   P+T
Sbjct: 1150 RTTPEPTT 1157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,062,227
Number of Sequences: 59808
Number of extensions: 548255
Number of successful extensions: 1799
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)