Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0559.Seq
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   1.1  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    27   2.4  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect(2) = 1.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 359  GPTHLYLPLFTEPLRTSG*ILQNWCYDTPVMCNANY 252
            GP    L  + E   T G  +++ C +T V C   Y
Sbjct: 941  GPERCLLEFYRETDCTLGQYIEDSCLNTNVSCGGEY 976



 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 134  QKI*QFQFCALIQKNTHI 81
            +KI  + +C   +KNTHI
Sbjct: 1012 EKIIMWSYCKFCKKNTHI 1029


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 273 RCVVAPILKYLATCS 317
           RCV++P +K+LATCS
Sbjct: 220 RCVLSPDVKHLATCS 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,177
Number of Sequences: 5004
Number of extensions: 57498
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)