Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0558.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    34   0.009
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    34   0.012
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   0.25 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.76 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   1.0  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   1.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   1.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   2.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   2.3  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   3.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.1  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   7.1  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    24   9.4  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    24   9.4  

>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 335 GARVNEKNKDGQTPLHVATEHSHLDAMDLLLRHGAKVN 448
           G   N  +++G TP+H A  + H D + +L+  G  +N
Sbjct: 27  GISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDIN 64



 Score = 29.5 bits (63), Expect = 0.25
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 284 ASVYPKRKQVMEMLIRKGARVNEKNKDGQTPLHV 385
           A+V      ++++L+ +G  +N +++DG+TPL V
Sbjct: 43  AAVSYGHSDLLKILVERGGDINIRDQDGETPLFV 76


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 33.9 bits (74), Expect = 0.012
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 323  LIRKGARVNEKNKDGQTPLHVATEHSHLDAMDLLLRHGAK 442
            L   G  VN+++  G TPLH A+ + H D    LL +GAK
Sbjct: 881  LCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAK 920


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 254 HRRSASTLRSASVYPKRKQVMEMLIRKGARVNEKNKDGQTPLHVATEHSHLDAMDLLLRH 433
           H  +++ L  A V  K  +++  L+R GA     N +G+TP  ++T +  +    L+ RH
Sbjct: 430 HLHTSTPLHYA-VTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARH 488


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 341 RVNEKNKDGQTPLHVATEHSHLDAMDLLLRH 433
           R+N+K++ G+T LH+A   +    +  LL+H
Sbjct: 44  RINQKDRYGRTVLHIAVSENKNSFVRSLLQH 74


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 362 DGQTPLHVATEHSHLDAMDLLLRHGAKV 445
           DG T LH A    H++ + LLLR  A +
Sbjct: 247 DGHTSLHWACSMGHIEMIKLLLRANADI 274


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 302 RKQVMEMLIRKGAR-VNEKNKDGQTPLHVATEHSHLDAMDLLLRHGAKVN 448
           R  ++++L  K    + +K+  GQTPLH A     +  +  L+   A +N
Sbjct: 119 RLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLN 168


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 311 VMEMLIRKGARVNEKNKDGQT-PLHVATEHSHLDAMDLLLRHGA 439
           + + L+  GA VN    D Q  P+H A +   +  +  L++HGA
Sbjct: 49  ICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGA 92


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 VNEKNKDGQTPLHVATEHSHLDAMDLLLRH 433
           VN  +K+  TPLH+A      D ++ LL H
Sbjct: 82  VNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111



 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 359 KDGQTPLHVATEHSHLDAMDLLLRHGA 439
           K GQT LHVAT+    + +  LL +GA
Sbjct: 187 KTGQTYLHVATKAKDAELVKWLLDNGA 213


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158  CWIAVEDNCFLTLVGSASLQ-ASRRQCPRYSKASLSWSSLVGATSSADFPWQL 3
            C++ +  NCF  L GS +++ A + QC  +     + +S++   +  ++ W L
Sbjct: 1366 CFVRLMINCFKDLKGSDAIEDAEKMQC-LFLLTVEATNSIISPNADYEYVWSL 1417


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 44  ENSKTDWPSSTADIVSWKPAGSR 112
           E  K DWP    D+ SW P  +R
Sbjct: 43  EFRKNDWPYPRGDLYSWVPVLNR 65


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +3

Query: 138 VFHGDPASVPK-HVRIDD---REHAV 203
           V HGDPA +P   V+I+D   R HAV
Sbjct: 325 VLHGDPARLPNFKVKIEDAPRRRHAV 350


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 293 YPKRKQVMEML--IRKGARVNEKNKDGQTPLHVATEHSHLDAMDLLLRHG 436
           +PKR    +    I +  +   ++KDG+  L++ ++ S +D   LLLR G
Sbjct: 608 FPKRNPYYKFTSTINRFRKAMIESKDGEAFLNMQSDISIVDKRILLLRRG 657


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 123 GQEAVVFHGDPASVPKHVRIDDREHAVATRRLHHGG 230
           G +AVV   DP      V  D + H V T RL   G
Sbjct: 387 GNQAVVISVDPKRQYVKVPEDTKHHVVKTSRLGPNG 422


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 296 PKRKQVMEMLIRKGARVNEKNKDGQTPLHVATEHSHLD 409
           P+ +   E  + K   + +KNKDGQ  L    E S  D
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRD 176


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 56  TDWPSSTADIVSWKPAGSRNQRGSR 130
           TD   S   + S +PAGSR + G R
Sbjct: 856 TDLNQSNTKVASARPAGSRKRLGVR 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,618
Number of Sequences: 5004
Number of extensions: 34097
Number of successful extensions: 112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)