Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0557.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 31 0.88
06_03_0986 - 26574083-26574952 30 2.0
07_03_0229 + 15506772-15508304 29 2.7
05_01_0120 - 828834-831143 29 2.7
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 29 3.5
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 3.5
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 29 4.7
03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582 29 4.7
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 28 6.2
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 28 6.2
08_01_0804 - 7774631-7775152,7775985-7776083 28 8.2
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.2
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 235 FHSNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISN 414
F SNE ++ + + P PKS+P P MP P+ P+ E + + + S ++
Sbjct: 566 FPSNEMSRNEDRCADLNKPMAP--PKSMPPPPPKSMPPPPPKFPSNEMSRNEDRRSDLNK 623
Query: 415 P 417
P
Sbjct: 624 P 624
>06_03_0986 - 26574083-26574952
Length = 289
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +1
Query: 262 NSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNI 441
N ++++++N +VP + P P +P+ P P + + + + P +M I
Sbjct: 179 NISVLQISNFVVPPGVLTRPRPGPGPLPLPSPPLPRMKPMAIAPTPAPVPAPT--KMVPI 236
Query: 442 PFSTSLTAPAENN 480
P S LT PA+ +
Sbjct: 237 PPSLPLTDPADED 249
>07_03_0229 + 15506772-15508304
Length = 510
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 620 SVLHLFVGRMLEVWQHW 570
SVLHLFVGR++E ++ W
Sbjct: 457 SVLHLFVGRLVEQFEWW 473
>05_01_0120 - 828834-831143
Length = 769
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +2
Query: 464 HLQRTICRCGSFNSPYHRSTRESLPTSAESDTPNNTNVAKLPTSAPRTNAIPTSVAYSHT 643
HL F SP S+ S+ + SD+P+ + PTS P S +SHT
Sbjct: 492 HLAAEASTSPPFLSPSSLSSDSSISSKYSSDSPSLSPSTSSPTS---LGLSPASSNFSHT 548
Query: 644 QRPEIFCPAH 673
P P H
Sbjct: 549 LVPSSRSPLH 558
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 558 PQTTPMLPNFQHPPHEQMQYRPQLPIHI 641
P T M+P F PHEQ+Q+R P+H+
Sbjct: 200 PGTPQMVPVF---PHEQIQWRHPTPVHM 224
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Frame = +1
Query: 298 PIKPKSVPAPAGNKMPIWEPR---QPNAEKTHMQAQTSA--ISNP---NIMQMNNIPFST 453
P +PK+ P PA K+ EP +P A KT +Q S+P + + NN+P S+
Sbjct: 1720 PSEPKAQPEPAEPKVKETEPSRTPEPKAPKTEEASQPGGRIFSSPLARKLAEDNNVPLSS 1779
Query: 454 SL-TAP 468
+ T P
Sbjct: 1780 VMGTGP 1785
>05_04_0077 -
17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/96 (21%), Positives = 43/96 (44%)
Frame = +1
Query: 319 PAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWEL 498
P+ + + P W P ++ + SA + IM +++P L+ AEN + + +
Sbjct: 228 PSSSIDDSPQWSIEAPESK---LFPDESADTIFQIMTCHSVPGGLLLSPLAENVLELRQK 284
Query: 499 QQPISQEYKRVPSDFS*IRHPKQHQCCQTSNIRPTN 606
++++++ D + Q CC TS+ P N
Sbjct: 285 STAVTKKHEAPVYDND--KEELQRNCCHTSSAAPDN 318
>03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582
Length = 330
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 536 PTSAESDTPNNTNVAKLPTSAPRTNAIPTSVAYSHTQRP 652
P+++ S +P + A P+SAPR +A P ++H Q P
Sbjct: 172 PSTSPSASPGSPPAAT-PSSAPRHDAHPAHGGFAHRQYP 209
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 555 TPQTTPMLPNFQHPPHEQMQYRPQLPIHIHNDLRSFVPP 671
+P +P PN PPH + P +P D S PP
Sbjct: 10 SPPASPSHPNPSPPPHADPRSAPPMPSSADADAPSSPPP 48
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 551 SDTPNNTNVAKLPTSAPRTNAIPTSVAYSHTQRP--EIFCPAH 673
S ++ +VA SAP T A PT VA RP + P H
Sbjct: 64 SRAKSDISVANAEESAPATGAAPTPVANHQNSRPTRSAYVPPH 106
>08_01_0804 - 7774631-7775152,7775985-7776083
Length = 206
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 621 VGIAFVRGADVGSLATLVLFGVSDSA 544
VG+AFV +G LA L +F S SA
Sbjct: 46 VGVAFVGSKQIGRLAFLTVFSSSSSA 71
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Frame = +1
Query: 298 PIKPKSV-PAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAE 474
P P S+ P PA P P P + ++ S P+ N PF + AP
Sbjct: 100 PPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYPFTNYPFFPNFAAPPP 159
Query: 475 NNMPVWELQQPISQE--YKRVPSDFS*IRHPKQ 567
P + QQ S + P++ S + HP Q
Sbjct: 160 ---PTQQQQQQPSGDGGLPTFPANISTLVHPTQ 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,638
Number of Sequences: 37544
Number of extensions: 406730
Number of successful extensions: 1439
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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