Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0557.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    31   0.56 
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi...    31   0.56 
At5g28270.1 68418.m03430 hypothetical protein similar to At2g121...    30   1.3  
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t...    29   3.0  
At2g31880.1 68415.m03895 leucine-rich repeat transmembrane prote...    29   3.0  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   3.0  
At5g26160.1 68418.m03111 expressed protein                             29   3.9  
At3g51230.1 68416.m05608 hypothetical protein                          28   5.2  
At2g05635.1 68415.m00600 hypothetical protein                          28   5.2  
At3g50370.1 68416.m05508 expressed protein                             28   6.8  
At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    27   9.0  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    27   9.0  

>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 268 NLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQA 393
           NL  VT    P  P++ P+P   K P + P  PNA   H QA
Sbjct: 244 NLFNVTIAPSP-SPETPPSPTSPKRPFFGPPSPNASAGHGQA 284


>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].;
          Length = 1169

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 533 LPTSAESDTPNNTNVAKLPTSAPRTNAIPTSVAYSHT 643
           +P +  SDTP +TNV K  T+  +   IPT    S T
Sbjct: 121 IPETQPSDTPASTNVEKAETATKKRTKIPTIYYASRT 157


>At5g28270.1 68418.m03430 hypothetical protein similar to At2g12100,
           At2g05450, At1g45090, At2g16180, At2g06750
          Length = 574

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +3

Query: 342 ADLGASSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGAS----TAH 509
           +D+  SST        S D  ++  + +A + YP   K +   R +Y G  A+    T  
Sbjct: 14  SDVNESSTATTNLGSTSKDPGELPQRLFALDHYPTKAKINAYSRPEYIGQIAAALKDTPE 73

Query: 510 ITGVQESPF 536
           +T + ESPF
Sbjct: 74  MTFLLESPF 82


>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 177

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 289 NIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAP 468
           N+ P KP++VP+P         P  P+         T ++  P++   N  P +   T  
Sbjct: 31  NLSP-KPRTVPSPKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSPNPTPVTPPRTPG 89

Query: 469 AENNMPV 489
           +  N P+
Sbjct: 90  SSGNCPI 96


>At2g31880.1 68415.m03895 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 641

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 503 SPYH-RSTRESLPTSAESDTPNNTNVAKLPTSAPR 604
           SP+  R      PTS+ ++ PNN+  +K P  AP+
Sbjct: 234 SPHQTRHILAETPTSSPTNKPNNSTTSKAPKGAPK 268


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 307 PKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNP 417
           P S P PA N  P+ +PR PN++   M +Q S+ + P
Sbjct: 466 PVSQPQPASNPFPVSQPR-PNSQPFSM-SQPSSTARP 500


>At5g26160.1 68418.m03111 expressed protein 
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 406 SLRSELACVFFRHSVDEAPKSASCSQLVQE 317
           +L+SE + +  +HSVD  PKS   SQ++ E
Sbjct: 374 ALKSEPSNLLPKHSVDGTPKSTFSSQVISE 403


>At3g51230.1 68416.m05608 hypothetical protein 
          Length = 230

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 528 SPFRLQLNPTPQTTPMLPNF 587
           SP RL L PTP  TP  PNF
Sbjct: 125 SPMRL-LAPTPANTPQFPNF 143


>At2g05635.1 68415.m00600 hypothetical protein
          Length = 146

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 533 LPTSAESDTPNNTNVAKLPTSAPRTNAIPTSVAYSHT 643
           +P + + DTP + NV K  T+  +   IPT    S T
Sbjct: 67  IPETQQRDTPASINVEKAETATKKRTKIPTIYYASRT 103


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 536  PTSAESD-TPNNTNVAKLPTSAPRTNAIPTSVAYSHTQRPEIFCPAHTWEFSHHQ 697
            PTS  SD   NNT     P   P       S    +TQ   +  P+H  +  HHQ
Sbjct: 2073 PTSTLSDPNSNNTQNPNGPGFKPPQQQQQQSSQEKNTQSQHVGGPSHHHQHQHHQ 2127


>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 549 NPTPQTTPMLPNFQH--PPH--EQMQYRPQLPIH 638
           +P P   P LP+  H  P H   + Q+RP LP++
Sbjct: 233 SPFPNLQPQLPSMHHGSPQHTGNRPQFRPALPLN 266


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 549 NPTPQTTPMLPNFQH--PPH--EQMQYRPQLPIH 638
           +P P   P LP+  H  P H   + Q+RP LP++
Sbjct: 233 SPFPNLQPQLPSMHHGSPQHTGNRPQFRPALPLN 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,174,461
Number of Sequences: 28952
Number of extensions: 337603
Number of successful extensions: 1237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)