Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0555.Seq
         (420 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000697-1|AAH00697.1|  656|Homo sapiens nucleoporin 85kDa protein.    47   3e-05
AK022611-1|BAB14130.1|  656|Homo sapiens protein ( Homo sapiens ...    47   3e-05
AF514995-1|AAM76706.1|  656|Homo sapiens nucleoporin Nup75 protein.    47   3e-05
AF498261-1|AAM18528.1|  656|Homo sapiens frount protein protein.       47   3e-05

>BC000697-1|AAH00697.1|  656|Homo sapiens nucleoporin 85kDa protein.
          Length = 656

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +2

Query: 59  LDSSLRA*HPGDMHQVIXEIQHXTDNGWFATHLSDILYHCGXLKVLXXXQXNVTXRLRDS 238
           LD+ L A    D+HQVI E      N WF  HL+D+L HC   K+L          +R+ 
Sbjct: 345 LDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC---KLLQSHNLYFGSNMREF 401

Query: 239 LILEY 253
           L+LEY
Sbjct: 402 LLLEY 406



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 SLWSVGLSYLASCPPEGLCRAXLXLERXPXNTHAXAMRV 393
           SLW +G+ Y   CP  G     L +ER P NT   A++V
Sbjct: 415 SLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKV 453


>AK022611-1|BAB14130.1|  656|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12549 fis, clone NT2RM4000689. ).
          Length = 656

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +2

Query: 59  LDSSLRA*HPGDMHQVIXEIQHXTDNGWFATHLSDILYHCGXLKVLXXXQXNVTXRLRDS 238
           LD+ L A    D+HQVI E      N WF  HL+D+L HC   K+L          +R+ 
Sbjct: 345 LDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC---KLLQSHNLYFGSNMREF 401

Query: 239 LILEY 253
           L+LEY
Sbjct: 402 LLLEY 406



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 SLWSVGLSYLASCPPEGLCRAXLXLERXPXNTHAXAMRV 393
           SLW +G+ Y   CP  G     L +ER P NT   A++V
Sbjct: 415 SLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKV 453


>AF514995-1|AAM76706.1|  656|Homo sapiens nucleoporin Nup75 protein.
          Length = 656

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +2

Query: 59  LDSSLRA*HPGDMHQVIXEIQHXTDNGWFATHLSDILYHCGXLKVLXXXQXNVTXRLRDS 238
           LD+ L A    D+HQVI E      N WF  HL+D+L HC   K+L          +R+ 
Sbjct: 345 LDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC---KLLQSHNLYFGSNMREF 401

Query: 239 LILEY 253
           L+LEY
Sbjct: 402 LLLEY 406



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 SLWSVGLSYLASCPPEGLCRAXLXLERXPXNTHAXAMRV 393
           SLW +G+ Y   CP  G     L +ER P NT   A++V
Sbjct: 415 SLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKV 453


>AF498261-1|AAM18528.1|  656|Homo sapiens frount protein protein.
          Length = 656

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +2

Query: 59  LDSSLRA*HPGDMHQVIXEIQHXTDNGWFATHLSDILYHCGXLKVLXXXQXNVTXRLRDS 238
           LD+ L A    D+HQVI E      N WF  HL+D+L HC   K+L          +R+ 
Sbjct: 345 LDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC---KLLQSHNLYFGSNMREF 401

Query: 239 LILEY 253
           L+LEY
Sbjct: 402 LLLEY 406



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 SLWSVGLSYLASCPPEGLCRAXLXLERXPXNTHAXAMRV 393
           SLW +G+ Y   CP  G     L +ER P NT   A++V
Sbjct: 415 SLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKV 453


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,140,433
Number of Sequences: 237096
Number of extensions: 722111
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)