Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0555.Seq
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-5|CAB00054.1|  598|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   7.2  

>Z75713-5|CAB00054.1|  598|Caenorhabditis elegans Hypothetical
           protein T01G9.4 protein.
          Length = 598

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 256 TLIMGXXSLWSVGLSYLASCPPEGLCRAXLXLE 354
           ++++    LW +G  YL +C  EGL R    +E
Sbjct: 358 SVLISHSPLWEIGAGYLIACGTEGLLRLETHIE 390


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   VVFCCFGLCWICIYSLML 54
           +VFCC   CW  +Y L L
Sbjct: 276 MVFCCLIYCWCVLYLLYL 293


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   VVFCCFGLCWICIYSLML 54
           +VFCC   CW  +Y L L
Sbjct: 276 MVFCCLIYCWCVLYLLYL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,718
Number of Sequences: 27780
Number of extensions: 105533
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)