Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0554.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17705.1 68415.m02051 expressed protein                             29   4.3  
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    28   5.7  

>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 TTIMCTPCGPMVCYKYEDCGPPL 194
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 650 WVRIRVR*CKAGRLTAATCSPTIVLQAVTLDAVAAVIHNPTSQFTAFI 507
           W R++    + G  TAAT SPT V   V L  +AA     TS +  F+
Sbjct: 286 WERVKNGAREFGSATAATLSPTKVASIVGLTGIAAAF--GTSVWVTFV 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,367
Number of Sequences: 28952
Number of extensions: 289816
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)