Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0552.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 224  YLPQPTSP*LCTKVVGG 274
            YLP+   P LCT +V G
Sbjct: 1417 YLPEDIDPDLCTHIVYG 1433



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 224  YLPQPTSP*LCTKVVGG 274
            YLP    P LCT +V G
Sbjct: 1842 YLPSDIDPDLCTHIVYG 1858



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 615  YNSDATTFVHCSW 577
            Y  D T ++HC W
Sbjct: 1287 YPGDCTRYLHCLW 1299


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +1

Query: 487 TCPLETKQSRLVGPNCPGIIAPEKCKIGXMP 579
           TC  E   ++     CP +  P+  K+  +P
Sbjct: 695 TCFCENGNNKCFTMECPQVTCPDNMKLEKVP 725


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNV 125
           FP+R    + +    PV ++ K  DG+ +  +
Sbjct: 216 FPYRGVMIDTARNFFPVDLIRKVVDGMAMAKL 247


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 321 NTGLPRCSVPAFFGD 277
           NT + +C++P+F  D
Sbjct: 138 NTAVLKCNIPSFVAD 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,438
Number of Sequences: 336
Number of extensions: 3592
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)