Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0552.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    99   5e-22
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   2.6  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   6.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.9  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   7.9  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 51/102 (50%), Positives = 61/102 (59%)
 Frame = +2

Query: 203 GFHWKAGYLPQPTSP*LCTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVP 382
           GF  K G      +    TKVVGG +PKKAGT HLGKPVFGT++EA   T A AS ++VP
Sbjct: 47  GFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVP 106

Query: 383 PPGXXXXXXXXXXXXMPLIVCXTEGVPQHDMVRVKHALLRQN 508
           PP             +PLIV  TEG+PQHDM+RV   L  Q+
Sbjct: 107 PPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQS 148



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +1

Query: 508 QSRLVGPNCPGIIAPEKCKIGXMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGPNFV 687
           +SRLVGPNCPGII P +CKIG MP+ +HK GCIG+VSRSGTLTYEA +QTT T LG + V
Sbjct: 149 KSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLV 208



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 30/61 (49%), Positives = 41/61 (67%)
 Frame = +3

Query: 87  LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYVLKL 266
           L +F    +L N    S + Y +T  NL++ S+TKVI QGFTGKQGTFH+Q A+DY  K+
Sbjct: 12  LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67

Query: 267 L 269
           +
Sbjct: 68  V 68


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 560 HFSGAMIPGQLGPTSLDCFVSRGHVLLAPYHV 465
           HF+   IPG L P++   F   G   + P H+
Sbjct: 568 HFNFRSIPGLLKPSTYGSFKHHGKTFVTPPHI 599


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 33  PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 152
           PF    F N T  +PV  +S+  +G +   N   +   P+A
Sbjct: 33  PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/69 (18%), Positives = 32/69 (46%)
 Frame = +3

Query: 45   FTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQG 224
            +  NN+     V+V   F+  +KLG V        ++T++N +++     ++  F   + 
Sbjct: 801  YKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVNFAKLLLSFNQFED 860

Query: 225  TFHSQQALD 251
              H + +++
Sbjct: 861  NSHLRMSIN 869


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 41
           NR  PS+S SLN   T   ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,471
Number of Sequences: 5004
Number of extensions: 58565
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)