Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0552.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   105   4e-23
04_04_1339 + 32760424-32760584,32762428-32764462                       33   0.29 
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773...    29   3.5  
08_02_0873 + 22100124-22100810                                         28   8.2  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  105 bits (251), Expect = 4e-23
 Identities = 54/104 (51%), Positives = 64/104 (61%)
 Frame = +2

Query: 197 CSGFHWKAGYLPQPTSP*LCTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIY 376
           C G   K G      +    T +VGGV+PKK GTEHLG PVF +V EAKA T A ASVIY
Sbjct: 47  CQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY 106

Query: 377 VPPPGXXXXXXXXXXXXMPLIVCXTEGVPQHDMVRVKHALLRQN 508
           VPPP             + L+VC TEG+PQHDMV+VK AL +Q+
Sbjct: 107 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQS 150



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = +1

Query: 508 QSRLVGPNCPGIIAPEKCKIGXMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLG 675
           ++RL+GPNCPGII P +CKIG MP  +HK G +G+VSRSGTLTYEA  QTT  GLG
Sbjct: 151 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLG 206



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 LILTSETKVIVQGFTGKQGTFHSQQALDY 254
           + +   T+VI QG TGK GTFH++QA++Y
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAIEY 65


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 30  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 170
           F  RR   N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>12_02_1048 +
           25675563-25675760,25676995-25677051,25677132-25677331,
           25677412-25677541,25677642-25677845,25678017-25678088,
           25678379-25678546
          Length = 342

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 147 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYVLKLLEECHQRR 290
           Y E   N+I+T+  +  +QGF  K   F  +Q+ D + K +E   + R
Sbjct: 71  YLEAGANIIITASYQATIQGFESK--GFSKEQSEDLLAKSVEIAREAR 116


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 514 RLVGPNCPGIIAPEKCKIGXMPAAVHKRGC 603
           R   P+C G + PE C+ G +P  V +R C
Sbjct: 77  RCPDPSCGGALDPELCR-GALPGDVFERWC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,480
Number of Sequences: 37544
Number of extensions: 410073
Number of successful extensions: 1080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)