Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0552.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  82   4e-16
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.018
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            31   1.2  
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            30   2.1  
SB_6865| Best HMM Match : NCD3G (HMM E-Value=3)                        28   8.4  
SB_2605| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  
SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = +1

Query: 514 RLVGPNCPGIIAPEKCKIGXMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLG 675
           RL+GPNCPG+I P +CKIG MP  +H  G +G+VSRSGTLTYEA  QTT  G G
Sbjct: 14  RLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDYGFG 67


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +1

Query: 610 VVSRSGTLTYEACHQTTITGLG 675
           +VSRSGTLTYEA HQT+   LG
Sbjct: 2   IVSRSGTLTYEAVHQTSHVNLG 23


>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 416

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTW 599
           SWYHCS+      H  CSA +W
Sbjct: 215 SWYHCSKIPDKERHQFCSANSW 236


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 433 GHFSLNSF*NGC-CSSRGRYINNRGSCSC 350
           GHF L  + + C C+  G   + RG CSC
Sbjct: 381 GHFFLQGYCSRCQCNGHGSICDERGKCSC 409


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH S+   NW H S +   W H S
Sbjct: 265 NWYHPSKTQANWYHPSKTQSNWNHPS 290



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH ++   NW H S +   W H S
Sbjct: 255 NWYHPTKTQANWYHPSKTQANWYHPS 280



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH S+   NW H + +   W H S
Sbjct: 465 NWYHPSKTQANWYHPTKTQANWYHPS 490



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLH 605
           +WYH ++   NW H S +   W H
Sbjct: 475 NWYHPTKTQANWYHPSKTKANWYH 498



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH ++   NW H + +   W H S
Sbjct: 145 NWYHRTKTQANWYHPTKTQANWYHPS 170



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH ++   NW H + +   W H S
Sbjct: 245 NWYHPTKTQANWYHPTKTQANWYHPS 270



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 531 LSWYHCSREV*NWXHASCSAQTWLH 605
           ++WYH ++   NW  AS +   W H
Sbjct: 354 VNWYHPTKTQANWNQASKTQANWCH 378



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLH 605
           +WYH S+   NW H   +   W H
Sbjct: 485 NWYHPSKTKANWYHPIKTQSNWYH 508


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH ++   NW H S +   W H S
Sbjct: 500 NWYHPTKTQANWYHPSKTQSNWYHPS 525



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTWLHRS 611
           +WYH ++   NW H + +   W H S
Sbjct: 490 NWYHPTKTQCNWYHPTKTQANWYHPS 515


>SB_6865| Best HMM Match : NCD3G (HMM E-Value=3)
          Length = 281

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 534 SWYHCSREV*NWXHASCSAQTW 599
           SWYHCS+      H  C A  W
Sbjct: 236 SWYHCSKIPDKQRHQFCPANYW 257


>SB_2605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 327 VPNT-GLPRCSVPAFFGDTPPTTLVHSQGLVGCGRYPAFQ*NPEQSLLF 184
           +P T G   C +  F GD   T  + S  LV C RY A      +SL F
Sbjct: 103 IPGTFGQITCKLIPFLGDVSNTVSIFSLVLVACDRYLAVVWPMSKSLHF 151


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 200  SGFHWKAGYLPQPTSP*LCTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 346
            +GF WK  + P PT+  +C +    ++ +   T  L K     +KE +A
Sbjct: 882  AGFPWKEEHAPLPTNFSICERRTRAIARRLHKTPDLMKSYDDIIKEQEA 930


>SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 204 GFTGKQGTFHSQQALDYVLKLLEECHQRRLVQ 299
           GF+GK+G  HS +A+   L    + HQ  LV+
Sbjct: 30  GFSGKEGHHHSLEAVTENLHERHDYHQTELVK 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,518,099
Number of Sequences: 59808
Number of extensions: 493026
Number of successful extensions: 1253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)