Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0552.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming] alpha... 106 1e-23
At5g23250.1 68418.m02720 succinyl-CoA ligase [GDP-forming] alpha... 103 9e-23
At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family prote... 28 5.2
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 28 6.8
At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family... 27 9.0
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 27 9.0
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi... 27 9.0
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 9.0
>At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial, putative / succinyl-CoA
synthetase, alpha chain, putative / SCS-alpha, putative
identical to SP|P53586 Succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
{Arabidopsis thaliana}; strong similarity to SP|P13086
Succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor {Rattus norvegicus}; contains
Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding
domain
Length = 347
Score = 106 bits (255), Expect = 1e-23
Identities = 56/104 (53%), Positives = 63/104 (60%)
Frame = +2
Query: 197 CSGFHWKAGYLPQPTSP*LCTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIY 376
C G K G + TK+V GV+PKK GTEHLG PVF +V EAKA T A ASVIY
Sbjct: 62 CQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIY 121
Query: 377 VPPPGXXXXXXXXXXXXMPLIVCXTEGVPQHDMVRVKHALLRQN 508
VP P + LIVC TEG+PQHDMVRVKHAL Q+
Sbjct: 122 VPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQS 165
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +1
Query: 508 QSRLVGPNCPGIIAPEKCKIGXMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLG 675
++RL+GPNCPGII P +CKIG MP +HK G IG+VSRSGTLTYEA QTT GLG
Sbjct: 166 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLG 221
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 168 LILTSETKVIVQGFTGKQGTFHSQQALDYVLKLL 269
+ + T+V+ QG TGK GTFH++QA++Y K++
Sbjct: 52 VFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMV 85
>At5g23250.1 68418.m02720 succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial, putative / succinyl-CoA
synthetase, alpha chain, putative / SCS-alpha, putative
similar to SP|P36967 Succinyl-CoA ligase [GDP-forming]
alpha-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, alpha chain) (SCS-alpha)
{Dictyostelium discoideum}; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 341
Score = 103 bits (248), Expect = 9e-23
Identities = 56/104 (53%), Positives = 62/104 (59%)
Frame = +2
Query: 197 CSGFHWKAGYLPQPTSP*LCTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIY 376
C G K G + TK+V GV+PKK GTEHLG PVF TV EAKA T A ASVIY
Sbjct: 57 CQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIY 116
Query: 377 VPPPGXXXXXXXXXXXXMPLIVCXTEGVPQHDMVRVKHALLRQN 508
VP P + LIVC TEG+PQHDMVRVK AL Q+
Sbjct: 117 VPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQS 160
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +1
Query: 508 QSRLVGPNCPGIIAPEKCKIGXMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLG 675
++RL+GPNCPGII P +CKIG MP +HK G IG+VSRSGTLTYEA QTT GLG
Sbjct: 161 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLG 216
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 168 LILTSETKVIVQGFTGKQGTFHSQQALDYVLKLL 269
+ + T+VI QG TGK GTFH++QA++Y K++
Sbjct: 47 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV 80
>At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 263
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 205 VSLESRVPSTANKPLTMY*SCWRSVTKEGWYRT 303
V L + +P T N P +Y RSV +EGW T
Sbjct: 105 VFLTAFMPDTRNLPAYVYQKLIRSVPQEGWLDT 137
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 228 FHSQQALDYVLKLLEECHQ-RRLVQNILVSLCLV 326
F + ++YV++LLEE H RL ++LV C++
Sbjct: 421 FFKGETVNYVMQLLEESHYFPRLAIDVLVDKCVL 454
>At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 Calcineurin-like
phosphoesterase
Length = 397
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 83 PDWHSHCRIIECKSTKGKN 27
P+WH R+IE K KG++
Sbjct: 343 PNWHRRARVIEAKLGKGRD 361
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 141 NPYAETRKNL----ILTSETKVIVQGFTGKQGTFHSQQALDYVLKLLEECHQRRLVQNIL 308
N Y + K++ +L S+ IV +TG + Q D +L L EE H+R + QN
Sbjct: 597 NEYLSSGKSMFREEVLGSDIAEIVSKWTGIPVSKLQQSERDKLLHLEEELHKRVVGQNPA 656
Query: 309 VSLCLVQSKRQR 344
V+ +R R
Sbjct: 657 VTAVAEAIQRSR 668
>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 534
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 95 LRKNPDWHSHCRIIECKSTKG 33
LR PD SHCR+IE + G
Sbjct: 97 LRFEPDLKSHCRVIEVAAESG 117
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 406 NGCCSSRGRYINNRGSCSCACLCLFDCTK 320
+GCCS+ GR+I C CL + DC +
Sbjct: 109 SGCCSAIGRFI-------CGCLVIQDCRR 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,881
Number of Sequences: 28952
Number of extensions: 326814
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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