Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0548.Seq
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LW64 Cluster: Regulator of transcription that contain...    34   4.1  
UniRef50_Q1DSZ1 Cluster: Predicted protein; n=1; Coccidioides im...    33   5.4  
UniRef50_Q7WC36 Cluster: Phage-related protein; n=1; Bordetella ...    33   9.5  
UniRef50_A6NU31 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q3LW64 Cluster: Regulator of transcription that contains
           myb domains; n=1; Bigelowiella natans|Rep: Regulator of
           transcription that contains myb domains - Bigelowiella
           natans (Pedinomonas minutissima) (Chlorarachnion
           sp.(strain CCMP 621))
          Length = 636

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 219 LNFIIVQSFFGIFTRSGKKLTLIALFSIIDDVLEFNCLSIN 97
           LNFII +  F I  +    +++I+L  II + + ++C  IN
Sbjct: 580 LNFIIKKLLFNILNKCRTNISIISLEQIISETMNYSCYKIN 620


>UniRef50_Q1DSZ1 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 115

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 19/83 (22%), Positives = 38/83 (45%)
 Frame = -1

Query: 614 SEAVVKISKSESAERYGYNHRESDAPPHEEPDGVG*AVEGLAEAVIDSRVNADSADIRRT 435
           S+ + K++ +E   R   +    +   +      G  V G  E ++ +  NA++A I+  
Sbjct: 20  SKVIQKVANAERGTRIFLSRTPKNDEKYNLRFDKGSVVGGEHELILQANKNAENASIKAA 79

Query: 434 GLFLSHRILRSLLIDMKEEKQKK 366
               SH+I   +L+D +   +KK
Sbjct: 80  AAADSHKIWAKILVDPENADEKK 102


>UniRef50_Q7WC36 Cluster: Phage-related protein; n=1; Bordetella
           parapertussis|Rep: Phage-related protein - Bordetella
           parapertussis
          Length = 632

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 637 LLEMINAAAKLLSKSVSQR-VQKGMDITIGKVTLPHMRNPMEWGKL*KD*QKP*SIAE*M 461
           LLE  + + +LL K ++Q  V KG ++  G   LP +R  + W     D +KP   A  +
Sbjct: 217 LLEQYSGSLQLLGKPLNQTFVDKGRELLAGHEVLPDLRVALAWWGCKFDLRKPVRRASEL 276

Query: 460 LIRL 449
           ++ L
Sbjct: 277 IVHL 280


>UniRef50_A6NU31 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 414

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = -2

Query: 688 DLPDPVAVGSYLPERKKL--LEMINAAAKLLSKSVSQRVQK-GMDITIGKVTL--PHMRN 524
           DLP P +VGS L  R+ L  LE + A    LS  V+ R+++ G+  T  +VT+  P+ R+
Sbjct: 244 DLPPPKSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARLRRHGLKCTTVQVTIRDPNFRD 303


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,744,287
Number of Sequences: 1657284
Number of extensions: 10613714
Number of successful extensions: 28278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28273
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)