Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0548.Seq
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   8.9  

>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 629  DDQCSSEAVVKISKSESAERYGYNHRESDAPP 534
            D QCS        +SE  E++G  HR+ DA P
Sbjct: 1540 DSQCSGAVGDTECRSEEEEKHGSRHRKEDAVP 1571


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 404  SLLIDMKEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSAKE 279
            S ++ +KE+K+K R   S + SD   ++  Y   + K SA++
Sbjct: 1251 SNVVILKEDKEKSREGKSGSESDRSAERSPYANSQDKVSAEQ 1292


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 413 ILRSLLIDMKEEKQKKRNSLSSTWSDNVIQK 321
           ++R+++ D++EEK K + +  S W +   QK
Sbjct: 575 LIRTMIFDLQEEKDKLKQANRSIWDEIYQQK 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,539
Number of Sequences: 59808
Number of extensions: 325973
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)