Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0548.Seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   3.2  
At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearl...    29   4.2  
At5g56010.1 68418.m06989 heat shock protein, putative strong sim...    29   4.2  
At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearl...    29   4.2  
At2g45900.1 68415.m05708 expressed protein                             28   5.5  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    27   9.6  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    27   9.6  

>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           KEE      SL++ W D++  K F V G+++F A
Sbjct: 283 KEEYAAFYKSLTNDWEDHLAVKHFSVEGQLEFKA 316


>At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearly
           identical to SP|P55737 Heat shock protein 81-2 (HSP81-2)
           {Arabidopsis thaliana}
          Length = 699

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           KEE      SLS+ W +++  K F V G+++F A
Sbjct: 277 KEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKA 310


>At5g56010.1 68418.m06989 heat shock protein, putative strong
           similarity to SP|P55737 Heat shock protein 81-2
           (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 699

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           KEE      SLS+ W +++  K F V G+++F A
Sbjct: 277 KEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKA 310


>At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearly
           identical to heat shock protein hsp81.4 [Arabidopsis
           thaliana] GI:1906828; contains Pfam profiles PF02518:
           ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain protein, PF00183: Hsp90 protein
          Length = 699

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           KEE      SLS+ W +++  K F V G+++F A
Sbjct: 277 KEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKA 310


>At2g45900.1 68415.m05708 expressed protein
          Length = 720

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 MKEEKQKKRNSLSSTWSDNVIQKDFYV 309
           M+EE+Q   +SLS   S ++IQ+D Y+
Sbjct: 426 MEEEEQTVMDSLSEAISSSIIQQDAYI 452


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 649 ERKKLLEMINAAAKLLSKSVSQRVQKGMDITIGK 548
           +R+K L       ++ + SVS+RV + MD+TIG+
Sbjct: 109 KRRKWLVGCTQPRRVAAMSVSRRVAEEMDVTIGE 142


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 232 LMLNVEFYNCSIFFWNFYSIGKKINFDS 149
           ++L    Y  S  F+N Y+ G++++FD+
Sbjct: 504 ILLTAILYLLSALFYNIYATGERVDFDT 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,911
Number of Sequences: 28952
Number of extensions: 239434
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)