Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0547.Seq
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   0.61 
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    27   4.3  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   5.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.6  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   5.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.9  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 688 MSKMTNSSADLRLRFQHGRLK-EQHAAFENLVQRTFIMLPFLSKFQ 554
           +SKM ++   L + F +GRLK E   + + + ++T + L   S FQ
Sbjct: 464 LSKMKSTELFLDMEFSYGRLKGEDLVSIQRIFKKTILRLSAFSYFQ 509


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = -3

Query: 141 YLAGW---GIVTYKIVLVLYLHSMTNKY---VISFPF 49
           YL+ W    I T+  VLV+Y+H + N Y   V++ PF
Sbjct: 44  YLSRWWALAIPTWLFVLVIYIHVVLNAYNTEVLTKPF 80


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 572 ISFQVPRRAPSARTDLWSAAP 510
           ISF VPRR+ S ++D++  AP
Sbjct: 348 ISFIVPRRSESFQSDIYPPAP 368


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +2

Query: 596 DEVFKGCVLFL-EAAMLEPES----QICGAVRHL 682
           DE++K C+LFL +   +  ES     ICG V HL
Sbjct: 484 DEIYKACLLFLRKLEDVSSESVLLGDICGIVLHL 517


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 483 SPCSVLGHRNVCDVSL*NHSNALSNHRRSPDKTCTAL 373
           SP S   H  +CD     H+N +  HRR+ D    AL
Sbjct: 101 SPTSKQTHMKLCD----QHNNGIEIHRRNCDSHAEAL 133


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 681 R*RTAPQICDSGSNMAASRNNTQPLKTSSSEHLLCFHFFPSSKTSTLRP 535
           R R   + CD         +  +P K   +  L C +  PSS+ S+  P
Sbjct: 23  RRRRVTRACDMCRRKKIKCDGLRPCKNCKAGKLECTYHMPSSRKSSFSP 71


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 555 WNLERNG-SIINVRWTRFSKAACCSLRRPCWNRSRRS 662
           W  E +  + +++ WT  +    C+    CW R  RS
Sbjct: 460 WIFESSDLAALDIAWTADNSLILCTRNGTCWKRELRS 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,841
Number of Sequences: 5004
Number of extensions: 67259
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)