Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0547.Seq
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1759 + 29285262-29287208                                         30   1.9  
06_03_0615 - 22761375-22761760,22762218-22765026                       30   1.9  
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359...    29   5.9  
01_06_1824 - 40146757-40147648,40150119-40150441                       29   5.9  
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937...    29   5.9  

>07_03_1759 + 29285262-29287208
          Length = 648

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 725 VNCMTCCMGETVHVK--DDEQLRRSATPVPTWPPQGTTR 615
           V  ++ C+ +  H+K   D  LR    P PTW PQG  R
Sbjct: 387 VGALSDCLRDLEHLKLLYDAALRDGKLPGPTWRPQGGVR 425


>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 468 TPSKETNVFNENVLRCCRPEISAGGGCSS--WNLER-NGSIINVR 593
           TP ++ N   +N+L C R E   G GCS   +  E  NG II V+
Sbjct: 759 TPFQKLNFCVDNILECLRDENVIGKGCSGVVYRAEMPNGEIIAVK 803


>11_03_0112 -
           10135052-10135168,10135712-10135795,10135879-10135953,
           10137801-10137978,10138048-10138212,10138291-10138337,
           10140233-10140301,10140531-10140629,10141256-10141375,
           10141459-10141581,10149251-10149364,10150725-10150913,
           10151058-10151110,10151365-10151470,10151957-10152085
          Length = 555

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 540 GGCSSWNLERNGSIINVRWTRFSKAACCSLRRPC 641
           G CS+WNLE N  +++  +      +   LR PC
Sbjct: 70  GTCSAWNLEANYEVVSFIYAFSGINSAEDLRYPC 103


>01_06_1824 - 40146757-40147648,40150119-40150441
          Length = 404

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 723 ELHDLLHGRDRPCQR*RTAPQICDSGSNMAA 631
           + H +  GR R   R R+AP +C S S++AA
Sbjct: 326 QAHQMAFGRMRSMYRGRSAPLMCKSTSSLAA 356


>01_01_1176 -
           9372879-9373097,9373814-9374278,9374372-9375447,
           9375534-9375687,9375783-9375879,9376238-9376374
          Length = 715

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 411 LIKRYYGFKVKHHK--HYDGLTPSKETNVFNENVLR 512
           L+ +Y+  + K      +D   PSKE+N F ENVL+
Sbjct: 229 LLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLK 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,052,134
Number of Sequences: 37544
Number of extensions: 467725
Number of successful extensions: 1332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)