Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0547.Seq
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)                   29   6.1  
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_18857| Best HMM Match : Gln-synt_N (HMM E-Value=1.5)                28   8.0  

>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -1

Query: 758 NQSTILLAKGGVNCMTCCMGETVHVKDDEQLRRSATPVPTWPPQGTTRSL*KPRPANIYY 579
           N+S  + +K  +N +  C+G  V   D E+LR    P+  +PP  +++SL +      YY
Sbjct: 499 NESKTIESKSSINILGYCVGRGVITPDQERLR----PLQEFPPPQSSQSLKRVVGMLAYY 554

Query: 578 A 576
           A
Sbjct: 555 A 555


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 711 LLHGRDRPCQR*RTAPQICDSGSNMAASRNNTQPLKTSSSEHLLCFHFFPSSKTSTLR 538
           L H   R C   ++A    D+G  MA S      +   S EHL+ F+F P++   T++
Sbjct: 207 LQHVGSRKCVIPKSAKMKPDNGEEMALSSRCENSVSDLSKEHLI-FNFIPTNPYVTMQ 263


>SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)
          Length = 319

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 LAGWGIVTYKIVLVLYLHSMTNKYVIS 58
           LAG G V Y I+    LH+ +N Y++S
Sbjct: 28  LAGNGAVAYVIIRTFRLHTASNAYILS 54


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 603 TSSSEHLLCFHFFPSSKT 550
           T++S+H++CF  FP SKT
Sbjct: 58  TNTSKHVMCFSDFPMSKT 75


>SB_18857| Best HMM Match : Gln-synt_N (HMM E-Value=1.5)
          Length = 164

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -1

Query: 809 GWLDDVHPFYAERYAFCNQSTILLAKGGVNCMTCCMGETVHVKDDEQLRRSATPVPTWPP 630
           GW+    PFY+  +  C+  T    +        C+      +D +Q RR+A      PP
Sbjct: 86  GWVTTPTPFYSSEFRICSDGTTGRMRPYDRQRHGCIVRNHRPRDRQQSRRTARS----PP 141

Query: 629 QGTT 618
             TT
Sbjct: 142 HSTT 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,328,766
Number of Sequences: 59808
Number of extensions: 520073
Number of successful extensions: 1500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)