Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0547.Seq
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.37 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 762 LQPVYDSLSKRWRELHDLLH 703
           LQPV  S S  WR+L +++H
Sbjct: 442 LQPVKSSKSSGWRKLRNIVH 461


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 605 FKGCVLFLEAAMLE 646
           F GC +FL AAM+E
Sbjct: 298 FLGCTIFLFAAMVE 311


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +2

Query: 455 LRWPNTEQGD*CVQRERATVLPTRDQCGRRVLVLELGKKWKHNKCSLDEVFKGCVLFLEA 634
           +RW +TE G    +  R T     D      L   LGK+WK N    D V K  +   E 
Sbjct: 61  IRWKDTEIGLFLHEELRRTEAFEVD------LEFYLGKEWKKNLNLRDSVTKYLIHLKEI 114

Query: 635 AMLEP 649
              EP
Sbjct: 115 EDTEP 119


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 YGFKVKHHKHYDGLTPSKETNVFNENVLRCCRPEIS 533
           YG+ +     +  L P   T+  +++ ++  RP++S
Sbjct: 382 YGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVS 417


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 685 TWTVSPMQQVMQFTPPFAKRIVDWLQNAYR 774
           TW  + ++     T  +    VDWL+N +R
Sbjct: 91  TWKDNRLRLPENMTSEYRLLEVDWLKNMWR 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,526
Number of Sequences: 438
Number of extensions: 4828
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)