Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0547.Seq
         (824 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01480.1 68418.m00061 DC1 domain-containing protein contains ...    29   5.0  
At5g02990.1 68418.m00243 kelch repeat-containing F-box family pr...    28   8.7  

>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 413

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 660 ICDSGSNMAASRNNTQPLKTSSSEHLLCFHFFP 562
           ICD   +MA + N T P   +   H    H+FP
Sbjct: 153 ICDFAVHMACAGNPTSPTIDNPKRHKHTLHYFP 185


>At5g02990.1 68418.m00243 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 548

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 816 DVRLVG*CTPLLCGAVCILQPVYDSLSKRWRELHDL 709
           D+ +VG     +CG       V+DS S +WR LHD+
Sbjct: 320 DIYIVG---GFVCGTSSKRVFVFDSRSHQWRRLHDM 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,687
Number of Sequences: 28952
Number of extensions: 363401
Number of successful extensions: 1051
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)