Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0546.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                33   0.004
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    32   0.007
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.75 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   3.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   7.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +3

Query: 339 LGDGTYGSVVLAQRRDTGEKVAIKRMKRKYYSWDEAMNLREVKSLKKLNHANIVKLRKSY 518
           LG G +G V  A  +  GE+VA K ++ + YS      L   K    L H+NIVK+    
Sbjct: 73  LGSGGFGIVYKALYK--GEQVAAKIIQTEKYS----NMLNSEKHASFLKHSNIVKVLMIE 126

Query: 519 ERTTLCISYLNICG 560
           +  +L +  + +CG
Sbjct: 127 QGASLSLITMELCG 140



 Score = 24.6 bits (51), Expect = 1.00
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 658 CIDTGFFHRDLKPENLL 708
           C + G  H D+KP+N+L
Sbjct: 171 CHNAGIVHADVKPKNIL 187


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 31.9 bits (69), Expect = 0.007
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 652 HICIDTGFFHRDLKPENLLCCGPELG 729
           H C   G  HRDLKPENLL      G
Sbjct: 23  HHCHHNGVVHRDLKPENLLLASKAKG 48


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 467 IA*KTQPRQYS*IKEVIRENDTLYFVFEYMR-GNLYQLIRDADRAFPEPV 613
           +A  T+P     +    +  D LYFV EY+  G+L   I+   + F EPV
Sbjct: 38  LALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGK-FKEPV 86


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 679 HRDLKPENLL 708
           +RDLKPENLL
Sbjct: 489 YRDLKPENLL 498


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = +3

Query: 438 DEAMNLREVKSLKKLNHANIVKLRKSYERTTL 533
           +E ++ R+VKS+  L+   +++++K  ++TT+
Sbjct: 73  EETVDGRKVKSVCTLDGNKLIQVQKGEKQTTI 104


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 85  HHFQNTFKLIQTTYVK 38
           +H QN FK+I++T  K
Sbjct: 57  NHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 85 HHFQNTFKLIQTTYVK 38
          +H QN FK+I++T  K
Sbjct: 40 NHIQNIFKIIKSTNEK 55


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -3

Query: 218 DLN*SETLNKHLVAYFQYPLINNVTNLCLRRNYLEIVKDYLSLQAS 81
           D+N  ET+ + L  Y+Q  ++  V    L   ++++ KD + +  +
Sbjct: 508 DMN-YETMGRALRYYYQRGILAKVDGQRLVYQFVDVPKDIIEIDCT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,274
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)