Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0545.Seq
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    30   0.28 
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   2.6  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   4.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.0  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   8.0  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   8.0  

>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 569 ECACNKKSYPSSFRSQTNGSMPPNQYKIPLPRKLKLTYAMRVY 441
           E + N KS  +S  S  NGS  P+ Y + +P K  +  ++ +Y
Sbjct: 32  ENSINNKSSTASLESPQNGSWHPSLYGLSVPEKTHIQNSLDLY 74


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 385 KNNKVILNVDVSTSGMISQ*TLIA*VSFSFLGNGILYWFGGI 510
           K   V+L V +S S  I++   I  V  +++G+ +L W GGI
Sbjct: 398 KKGYVMLAVILSNSSKINRRVDIIVVPPAYIGSAVLGWSGGI 439


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
 Frame = -3

Query: 585 LLPYTRMCL**EKLPLEFSESDEWIYASEPV*DSIAK--ETEADLRYEGLL-GDHTAGAH 415
           ++P +R       L LE     E I  S+   + + K   +E DL  + +L G H  G H
Sbjct: 51  VIPLSRFASEKSALELEKELFSERIPESQSAAEPVLKVENSENDLDEKLVLDGQHVEGDH 110

Query: 414 IDVQYNFIVFGYSLVLNE*DGCGLLNAQSRQYIQNYGPSESFRPQGHARQPALQPWPEMQ 235
                  +V      LN+ D         + YIQ    S S   Q  +  P+L+P     
Sbjct: 111 SSDTEEEVVSEDQKQLNKTDDESTFIESHQIYIQGETKSPSSVSQSLSGDPSLKP----A 166

Query: 234 DVLDKMKMAEKRS 196
           +V D+ + AE  S
Sbjct: 167 EVFDRKQSAEINS 179


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 444 NPHSVGQLQFPWQWNLILVRRHRSIRLTPKTRGVTFLITS 563
           N H + +L  PW    + V + +S  +T ++ G+   IT+
Sbjct: 747 NKHEISELPDPWLHKNLSVIQEKSSFITRRSGGIPLSITA 786


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  SNLLHNMDYKKRSTKENIDTHQK*VEKKTRID 173
           S + HN ++       N++T Q  +EKK  ID
Sbjct: 192 SRVAHNRNFSDGPIVTNLETDQPRIEKKLTID 223


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 286 TEGF-RRSIVLDILSRLCVE*TTSILFVKDQAIPKNNKVILNVDVSTSGM 432
           T GF R ++V+D L  +      ++   K  AI  ++ +  N DV+ SGM
Sbjct: 568 THGFVRLNVVMDALESMISTAQAAMQKAKQIAINFSSNLATNEDVTNSGM 617


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 533 NSRGNFSYYKHIRVYGSSGAP*LRYHFFSFTLFGSPVYFY 652
           NS  +    K+ R+  ++G    RY FF++ + GS V+++
Sbjct: 308 NSGNDIGVLKNNRI-SANGWTISRYRFFAYVMIGSFVFYW 346


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 355 WMWSTQRTIATIYPELWTFGILP 287
           W W T+      Y + W  G+LP
Sbjct: 519 WNWDTENATQWSYKKSWLAGLLP 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,450
Number of Sequences: 5004
Number of extensions: 61184
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)