Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0545.Seq
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0643 + 12590928-12592172,12592609-12592698                       29   3.6  
02_02_0651 - 12649275-12649373,12649418-12650479                       29   4.8  
01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011     29   4.8  

>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 NVLHFRPGL*RWLTSMTLWTEGFR 300
           N++ +RPG+  W+  M  W  GF+
Sbjct: 165 NIMFWRPGMSDWVPQMLKWDSGFK 188


>02_02_0651 - 12649275-12649373,12649418-12650479
          Length = 386

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 NVLHFRPGL*RWLTSMTLWTEGFR 300
           N++ +RPG+  W+  M  W  GF+
Sbjct: 165 NIMFWRPGMSDWVPPMLKWDSGFK 188


>01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011
          Length = 477

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 432 DLPVNPHSVGQLQFPWQWNLILVRRHRSIRLTPKTRGVTFLITSTFGC 575
           +L V+P +   L        IL+RRHR      K +G  ++ITS  GC
Sbjct: 314 ELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITS--GC 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,602
Number of Sequences: 37544
Number of extensions: 371996
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)