Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0545.Seq
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   6.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   6.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 453 SVGQLQFPWQWNL 491
           SV   Q+PWQW L
Sbjct: 92  SVFWQQYPWQWGL 104


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 367 KDQAIPKNNKVILNVDVSTSGMISQ*TLIA*VSFSFLGNGILYWF 501
           KD+ I   + V++   + TSG++ +   +  +   FL  GI+  F
Sbjct: 128 KDELITGWSAVVITAAICTSGIVGRTHTVGYIIIGFLLAGIVQPF 172


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 129 CFLLYFFSCNPYCVIGYFRSFIE 61
           CF++ F S   Y  +GY    I+
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQ 312


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 129 CFLLYFFSCNPYCVIGYFRSFIE 61
           CF++ F S   Y  +GY    I+
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQ 312


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 129 CFLLYFFSCNPYCVIGYFRSFIE 61
           CF++ F S   Y  +GY    I+
Sbjct: 229 CFVMVFASLLEYATVGYMAKRIQ 251


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 182 KLAINPSFFFNSFLMCVYVFFCTSFL 105
           K AI        FL+C   FFC + +
Sbjct: 269 KAAITVGVIMGVFLICWVPFFCVNIV 294


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 462 QLQFPWQWNLILVRRHRSIR 521
           Q  +P++W LIL RR++ ++
Sbjct: 84  QQNYPYEWQLIL-RRYKIMK 102


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 561 STFGCMEAAARHNLDIISFLLLYLEVQYIFI 653
           S  GC++A     ++++    LY+E  Y  I
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYVEPVYKMI 94


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 561 STFGCMEAAARHNLDIISFLLLYLEVQYIFI 653
           S  GC++A     ++++    LY+E  Y  I
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYVEPVYKMI 94


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 536 SFRSQTNGSMPPNQYK 489
           S RS T+ + P NQYK
Sbjct: 101 SNRSSTSSNDPKNQYK 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,961
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)