Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0545.Seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    29   2.3  
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    29   4.0  
At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SD...    28   6.9  

>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 658 LAIKIYWTSK*SKRKEMISKLWRAAASIHPNVLVIR 551
           +A+K    S   ++KE  S++ RAA   HPNV+ I+
Sbjct: 293 VAVKRLKRSSFQRKKEFYSEIRRAAKLYHPNVVAIK 328


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 105 KKRSTKENIDTHQK*VEKKTRIDCKFGP*LEIFSRPFSSCPERPAFP 245
           K++  K   +T +K  +K + +  KF   ++   R   +CP RPA P
Sbjct: 42  KQKKQKNQNETSEKETKKFSTVYEKFNDTIKELDRVSGTCPIRPAIP 88


>At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 389

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 241 FRPGL*RWLTSMTLWTEGFRRSIVLDILSRLCVE*TTS 354
           F P + RW   + L TEG RRS ++ + S + V+ ++S
Sbjct: 296 FTPNVLRWTFKLLLSTEGTRRSSLVGVGSGMPVDESSS 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,590
Number of Sequences: 28952
Number of extensions: 311845
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)