Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0544.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.45 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   2.4  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   9.7  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 407 HNGPQNGFESNGPISSI 457
           +N P NG  S+GP SSI
Sbjct: 75  NNVPSNGLSSSGPFSSI 91


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 295 LKTTLER--QSDCPKCRSKIKSS 357
           LK+T+     +DC KC  K+K++
Sbjct: 58  LKSTIPEALSTDCAKCNEKVKAN 80


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 316 QSDCPKCRSKIKSSRGYHAIYL 381
           ++DC KC  K K    +   YL
Sbjct: 74  ETDCSKCSEKQKEGSDFIMRYL 95


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 103 YYRQHKENWE 132
           YYR++K+ W+
Sbjct: 119 YYRENKQGWQ 128


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +3

Query: 222 QFVYKIFVINPAGDEMWPRVLRHLLKDN 305
           QF+  +F       + W   +RH L  N
Sbjct: 168 QFIMDLFPFYRQNQQRWQNSIRHSLSFN 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,700
Number of Sequences: 336
Number of extensions: 2961
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)