Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0544.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    28   0.098
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 27.9 bits (59), Expect = 0.098
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 432 SPTDPYHQSLFAKLENPDVVYQNFVKDWLSIIF 530
           +PTD Y +S F  L+NP V  + F+    ++ F
Sbjct: 540 TPTDSYIRSFFELLQNPKVSNEQFLNTAATLSF 572


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 470 FCK-QRLMIWVRWTQIHFEGHC 408
           FC  +R+++  R  Q H E HC
Sbjct: 226 FCAARRIVLEERRAQSHLEAHC 247


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 500 FRERLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREEL 640
           F   +   H+QVKA+++ +++ + S   +         K  E  EEL
Sbjct: 257 FTRTIPSDHYQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELEEL 303


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 412 WPSKWI*VQRTHIINRCL 465
           W SKW+ +  +    RCL
Sbjct: 69  WQSKWLSINHSACAIRCL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,281
Number of Sequences: 438
Number of extensions: 3280
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)