Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0543.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    29   4.2  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    29   4.2  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    29   4.2  

>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform b protein.
          Length = 1284

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 396  TDSFLFVLSLFLQKFRSFTYRLRHYEVCRVS*S*IKKSIR 277
            TD    VL +F   FRS++YR+RH   C VS +  K  IR
Sbjct: 958  TDVSGTVLKVFTD-FRSWSYRMRHISGCTVSLTNDKTVIR 996


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform a protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 396  TDSFLFVLSLFLQKFRSFTYRLRHYEVCRVS*S*IKKSIR 277
            TD    VL +F   FRS++YR+RH   C VS +  K  IR
Sbjct: 954  TDVSGTVLKVFTD-FRSWSYRMRHISGCTVSLTNDKTVIR 992


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 396  TDSFLFVLSLFLQKFRSFTYRLRHYEVCRVS*S*IKKSIR 277
            TD    VL +F   FRS++YR+RH   C VS +  K  IR
Sbjct: 954  TDVSGTVLKVFTD-FRSWSYRMRHISGCTVSLTNDKTVIR 992


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,846
Number of Sequences: 27780
Number of extensions: 264524
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)