Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0543.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18193.1 68415.m02117 AAA-type ATPase family protein contains...    31   0.73 
At5g41505.1 68418.m05040 hypothetical protein                          29   3.9  

>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 495

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 307 QLVINKKINSSLKFSYITRIMLESKEIRRN 218
           +L   KK+   +  SY+T ++ ES+EI+RN
Sbjct: 143 ELTFEKKLRDKVLNSYLTHVVAESEEIKRN 172


>At5g41505.1 68418.m05040 hypothetical protein
          Length = 245

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -2

Query: 673 NWEVSFETSCIFVNHMPL----HLDIQC 602
           NW+++ +TSC+F  H PL    HL  QC
Sbjct: 112 NWKLNVDTSCVFCKH-PLETREHLFFQC 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,688
Number of Sequences: 28952
Number of extensions: 225439
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)