Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0540.Seq
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 29 2.2
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 29 2.2
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 29 3.0
12_01_0732 + 6524622-6524634,6524907-6525511 28 3.9
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 28 3.9
10_08_0289 + 16534063-16534100,16534219-16534243,16534847-165349... 28 5.2
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 28 5.2
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253... 28 5.2
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 5.2
04_04_0991 - 29969162-29969912,29970097-29970368 28 5.2
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 27 6.8
02_01_0695 - 5202091-5202498,5204103-5204588 27 6.8
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 27 9.0
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 27 9.0
05_07_0057 - 27386081-27386164,27386317-27386379,27386584-273866... 27 9.0
02_05_0748 - 31463559-31464764 27 9.0
02_01_0302 - 2021221-2023305 27 9.0
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 132 QYAGVGASTAQYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIHND-L 308
++ G GAS R L + E+D V + T H + YRPQ H + D L
Sbjct: 285 EHGGAGASATVEQRR----LAYADEADHGGWRPVPVVSTGQHATLVYRPQTAAHTYQDSL 340
Query: 309 RSFV 320
R FV
Sbjct: 341 RRFV 344
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 377 TVTDNTNYTSNASNVYATFAINISNATSATDTIGTTNAACATSA 508
TV + +++ NV A+ ++NAT+ T GTT A T A
Sbjct: 124 TVAKSIEFSNRVKNVGASLVKQVANATNDTAGDGTTCATVLTKA 167
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 204 QLKSEGTLLYSC---DIGLLKLPHRHIVLCR-CSQTC 106
+LK+E L C DI ++ LP RH VLC CS C
Sbjct: 343 KLKNEQILCRICFERDICIVLLPCRHYVLCEACSDKC 379
>12_01_0732 + 6524622-6524634,6524907-6525511
Length = 205
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 414 AMFTQPLPSTSAMQLPQLIPSA 479
A+F+QPLP AM L L PS+
Sbjct: 156 ALFSQPLPPDHAMALSSLFPSS 177
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 224 VVWGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 108
VV F+ + +CT + +GC S+T IL SA V++
Sbjct: 480 VVSLASFNGEERIFACTGIFIGCDESNTRILTSASLVRI 518
>10_08_0289 +
16534063-16534100,16534219-16534243,16534847-16534978,
16535255-16535441,16536014-16536189,16536282-16536377,
16536511-16536615,16536654-16536683,16536698-16536784,
16536874-16536963,16537033-16537113,16537200-16537268,
16537413-16537490,16537578-16537673,16537981-16538080,
16538208-16538311,16538396-16538501,16538595-16538673,
16538861-16538963
Length = 593
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 377 TVTDNTNYTSNASNVYATFAINISNATSATDTIGTTNAACATSA 508
TV + + NV A+ ++NAT+ T GTT A T A
Sbjct: 95 TVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKA 138
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +1
Query: 10 PRQPNAEKTHMQA---QTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQ 180
P P+A + + A Q S NP+IM N P P+ N +P+ +
Sbjct: 879 PAPPSASQLQVHAPPVQGSVPPNPSIMHTPNAPM------PSHNTLPLPPMHPSGNPAHS 932
Query: 181 ESPFRLQLNPTPQTTPML 234
P R + P P+ P L
Sbjct: 933 SMPLRSFVPPLPEGPPPL 950
>07_03_1600 -
28024495-28024509,28024681-28024731,28025083-28025355,
28025427-28025554,28025645-28025764,28025856-28025933,
28025993-28026061,28026183-28026213
Length = 254
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 224 VVWGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 108
VV F + +CT + +GC S+T IL SA V++
Sbjct: 92 VVSLASFKGEERIFACTGIFIGCSESNTRILTSASLVRI 130
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 162 QYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQL 284
Q+H SLP SAE P++ ++++ T ++++ + L
Sbjct: 1066 QFHSEKSSSLPKSAEGHIPSSADISRKETPGVQRLKEQGSL 1106
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +1
Query: 40 MQAQTSAISNPNIMQMNNIP-FSTSLTAPAENNMPVWELQQ--PNITGVQESPFRLQLNP 210
+ A A +N + +N+ F + A A N L+ P+ G +P +
Sbjct: 204 LMATNLAATNTMVNSSSNVASFQEQMNALAHANYQPGYLRDVVPSFPGQDMAPQLNSTSS 263
Query: 211 TPQTTPMLXNFQHPXTNKCN 270
TP T P+L + P CN
Sbjct: 264 TPSTAPVLRSSAEPADQCCN 283
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 27.5 bits (58), Expect = 6.8
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +3
Query: 204 ESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIHNDLRSFVPPTL-GVXPSPXFESXXXXXX 380
E+ N V K PT Q Q Q+P + N L + +P ++ P+ +S
Sbjct: 290 ENPQVGNAPVDK-PTQEVPQNQLPTQIPQSVQNQLPTQIPQSVQNQLPAQIPQSVQNQLP 348
Query: 381 XXXXXXXXXXXAMFTQPLPSTSAMQLPQLIPSAQLMQPAQP 503
+ TQ ST +Q Q +PS Q Q QP
Sbjct: 349 TQIPQSVQNRLS--TQNPQSTQTLQTTQNLPSIQTQQLTQP 387
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 309 SGRCVCE*ATEVGIAFVRXR-MLEVXQHWCCLGCRIQ-LKSEGTLLYSCD 166
+GRC A R +L+V +C LGC+++ ++S+ TL ++ D
Sbjct: 128 NGRCAAAAAVACAACEACGRGLLDVAFRFCSLGCKLKCMESDPTLTFTID 177
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 296 YVNRQLRSVLHLFVXGCWK 240
Y+ QLR + H FV CWK
Sbjct: 118 YMPLQLRVLFHSFVASCWK 136
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 216 PNNTNVAKLPTSAHEQMQYRPQLPIHIHNDLRS 314
P+ K P H+ MQ RP H+H +L S
Sbjct: 382 PDTRAHQKFPRVGHKMMQERPLEDAHMHTNLTS 414
>05_07_0057 -
27386081-27386164,27386317-27386379,27386584-27386637,
27386768-27386881,27386965-27387192
Length = 180
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 487 ISCADGISCGSCIAD-VDGK 431
++C G SCG+CI + VDGK
Sbjct: 118 MNCGGGGSCGTCIVEIVDGK 137
>02_05_0748 - 31463559-31464764
Length = 401
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -3
Query: 273 GIAFVRXRMLEVXQHWCCLGCRIQLKSEGTLLYSCDIGLLKLPHRHIVLC 124
G + R L + +HW C +Q S + L K+PH +C
Sbjct: 100 GELYKERRQLGIAEHWVYFSCNVQEWEAYDPYRSRWMTLPKMPHNECFMC 149
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 150 ASTAQYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIHNDLRSFVPPT 329
+STA S +S PT +P T PTSA ++ R P + + S PP+
Sbjct: 524 SSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSA-DRPDVRFAPPPGSYGPIPS-TPPS 581
Query: 330 LGVXPSP 350
G PSP
Sbjct: 582 SGSPPSP 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,239
Number of Sequences: 37544
Number of extensions: 279037
Number of successful extensions: 866
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -