Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0540.Seq
(518 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF007190-1|AAC02268.1| 513|Homo sapiens intestinal mucin protein. 35 0.15
BC013365-1|AAH13365.1| 704|Homo sapiens chromosome 20 open read... 32 1.4
BC010005-1|AAH10005.1| 704|Homo sapiens chromosome 20 open read... 32 1.4
AL162458-2|CAC10456.1| 704|Homo sapiens chromosome 20 open read... 32 1.4
AB050014-1|BAC45238.1| 704|Homo sapiens posphorylated CTD inter... 32 1.4
BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing ... 31 2.4
AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210... 31 2.4
AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210... 31 2.4
AF387761-1|AAK71311.1| 148|Homo sapiens TCR beta chain Vbeta13S... 31 2.4
AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein. 31 2.4
X74848-1|CAA52840.1| 140|Homo sapiens T-cell receptor beta chai... 30 5.6
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 29 9.8
AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein. 29 9.8
>AF007190-1|AAC02268.1| 513|Homo sapiens intestinal mucin protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.15
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 239 TSNIRXRTNAIPTSVAYSHTQRPEIFCPAHTWSSXITXLRIYTAAATVTDNTNYTSNASN 418
TS+I T T + SHT S+ +T L +T T T Y ++ ++
Sbjct: 38 TSSILSSTPVPSTEMITSHTTNTTPL------STLVTTLLTTITRSTPTSETTYPTSPTS 91
Query: 419 VYATFAINISNATSATDTIGTTNAACATSASVP 517
+ + I+ +TS T T+ T TS+S+P
Sbjct: 92 IVSDSTTEITYSTSITGTLSTATTLPPTSSSLP 124
>BC013365-1|AAH13365.1| 704|Homo sapiens chromosome 20 open reading
frame 67 protein.
Length = 704
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 49 QTSAISNPNIMQMNNIPFSTSL--TAPAENNMPVWEL--QQPNITGVQESPFRLQLNPTP 216
Q IS+P + +P +SL T PAEN +L +QP+ GV++ + + PT
Sbjct: 79 QHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTG 138
Query: 217 QTTP 228
Q+ P
Sbjct: 139 QSVP 142
>BC010005-1|AAH10005.1| 704|Homo sapiens chromosome 20 open reading
frame 67 protein.
Length = 704
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 49 QTSAISNPNIMQMNNIPFSTSL--TAPAENNMPVWEL--QQPNITGVQESPFRLQLNPTP 216
Q IS+P + +P +SL T PAEN +L +QP+ GV++ + + PT
Sbjct: 79 QHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTG 138
Query: 217 QTTP 228
Q+ P
Sbjct: 139 QSVP 142
>AL162458-2|CAC10456.1| 704|Homo sapiens chromosome 20 open reading
frame 67 protein.
Length = 704
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 49 QTSAISNPNIMQMNNIPFSTSL--TAPAENNMPVWEL--QQPNITGVQESPFRLQLNPTP 216
Q IS+P + +P +SL T PAEN +L +QP+ GV++ + + PT
Sbjct: 79 QHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTG 138
Query: 217 QTTP 228
Q+ P
Sbjct: 139 QSVP 142
>AB050014-1|BAC45238.1| 704|Homo sapiens posphorylated CTD
interacting factor PCIF1 protein.
Length = 704
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 49 QTSAISNPNIMQMNNIPFSTSL--TAPAENNMPVWEL--QQPNITGVQESPFRLQLNPTP 216
Q IS+P + +P +SL T PAEN +L +QP+ GV++ + + PT
Sbjct: 79 QHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTG 138
Query: 217 QTTP 228
Q+ P
Sbjct: 139 QSVP 142
>BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing 4A
protein.
Length = 1039
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 9 ASSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRES 188
AS E + +H SS SD SQY Q F+ T Q ++T +
Sbjct: 937 ASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMC----------KATSAA 986
Query: 189 LPTSAESDTPNNTNVAKLPTSAHEQMQYR 275
LP S S TP++ A P+S H + ++
Sbjct: 987 LPQSQRSSTPSSEIGATPPSSPHHILTWQ 1015
>AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 9 ASSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRES 188
AS E + +H SS SD SQY Q F+ T Q ++T +
Sbjct: 937 ASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMC----------KATSAA 986
Query: 189 LPTSAESDTPNNTNVAKLPTSAHEQMQYR 275
LP S S TP++ A P+S H + ++
Sbjct: 987 LPQSQRSSTPSSEIGATPPSSPHHILTWQ 1015
>AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 9 ASSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRES 188
AS E + +H SS SD SQY Q F+ T Q ++T +
Sbjct: 937 ASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMC----------KATSAA 986
Query: 189 LPTSAESDTPNNTNVAKLPTSAHEQMQYR 275
LP S S TP++ A P+S H + ++
Sbjct: 987 LPQSQRSSTPSSEIGATPPSSPHHILTWQ 1015
>AF387761-1|AAK71311.1| 148|Homo sapiens TCR beta chain
Vbeta13S2A1T-KPTSASSYEQYF-Jbeta2.7 protein.
Length = 148
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 171 RSTRESLPTSAESDTPNNTNV---AKLPTSAHEQMQYRPQLPIHIHNDLRSFVPPTLGV 338
R +++ +ES P+ T+V A PTSA + + P + + DL++ PP + V
Sbjct: 79 RLKKQNFLLGSESAAPSQTSVYFCASKPTSASYEQYFGPGTRLTVTEDLKNVFPPEVAV 137
>AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein.
Length = 1051
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 9 ASSTECRKNTHASSDLSDIKSQYYADEQYPFLNKFDCTCREQYAGVGASTAQYHRSTRES 188
AS E + +H SS SD SQY Q F+ T Q ++T +
Sbjct: 949 ASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMC----------KATSAA 998
Query: 189 LPTSAESDTPNNTNVAKLPTSAHEQMQYR 275
LP S S TP++ A P+S H + ++
Sbjct: 999 LPQSQRSSTPSSEIGATPPSSPHHILTWQ 1027
>X74848-1|CAA52840.1| 140|Homo sapiens T-cell receptor beta chain
protein.
Length = 140
Score = 29.9 bits (64), Expect = 5.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 171 RSTRESLPTSAESDTPNNTNVAKLPTSAHEQ--MQYRPQLPIHIHNDLRSFVPP 326
RST E P E P+ T+V +S H Q + P + + DL++ PP
Sbjct: 87 RSTTEDFPLRLELAAPSQTSVYFCASSRHRQDTQYFGPGTRLLVLEDLKNVFPP 140
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 272 PTSVAYSHTQRPEIFCPAHTWSSXIT--XLRIYTAAATVTDNTNYTSNASNVYATF 433
PTS +YSHT++P IF + T L+I A+ V T + S Y+ +
Sbjct: 1235 PTSASYSHTEKPGIFYQQVLPDNHPTEEALKISVASEPVDQTTGTPAVTSTSYSQY 1290
>AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein.
Length = 2557
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 272 PTSVAYSHTQRPEIFCPAHTWSSXIT--XLRIYTAAATVTDNTNYTSNASNVYATF 433
PTS +YSHT++P IF + T L+I A+ V T + S Y+ +
Sbjct: 1233 PTSASYSHTEKPGIFYQQVLPDNHPTEEALKISVASEPVDQTTGTPAVTSTSYSQY 1288
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,574,762
Number of Sequences: 237096
Number of extensions: 1532275
Number of successful extensions: 4605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4597
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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