Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0540.Seq
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    29   1.4  
At3g13850.1 68416.m01749 LOB domain family protein / lateral org...    29   2.5  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    27   5.7  
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i...    27   7.6  
At3g60330.1 68416.m06743 ATPase, plasma membrane-type, putative ...    27   7.6  
At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative (I...    27   7.6  

>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 52  TSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPF 192
           T+A  NP  MQ +    S ++  P    M + + QQ  +T + +SP+
Sbjct: 502 TAAPPNPFQMQQDPFAMSNNIAPPTNVQMAMQQQQQQQMTMMHQSPY 548


>At3g13850.1 68416.m01749 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD22) identical to
           SP|Q9LRW1 Putative LOB domain protein 22 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 268

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 13  RQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPF 192
           ++P+ +    +  +S  S+ ++   N+IP++  L    E N   +     N +G+QE  +
Sbjct: 149 QEPHIQMQEQEDLSSFSSSCDLNNNNSIPYNYPLNHIQEPNQQQYCSSGNNFSGLQEDMW 208

Query: 193 RLQLNPTPQTTPMLXNF 243
            LQL  +     M   F
Sbjct: 209 CLQLQDSSTIVNMKAGF 225


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 165 YHR--STRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIHNDLRSFVPPTLG 335
           YH+   T  +  T+  +D PN+  +    +S H+Q Q +P+   ++  +  S + P +G
Sbjct: 31  YHKLPKTPNNTSTNINNDHPNSNIITSSSSSIHKQFQPKPK--DYVTTNKASSLQPRIG 87


>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
           identical to Homeobox protein LUMINIDEPENDENS
           (Swiss-Prot:Q38796) [Arabidopsis thaliana]
          Length = 953

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 162 QYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIH 299
           Q+H++  +S+P  A S   N+  +A   T   +Q   +P+L  ++H
Sbjct: 798 QWHQTNEQSIPRHAPSAYSNSITLAH--TEREQQQYMQPKLHHNLH 841


>At3g60330.1 68416.m06743 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from Nicotiana plumbaginifolia
           [SP|Q08435, SP|Q08436], Lycopersicon esculentum
           [GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
           contains InterPro accession IPR001757: ATPase, E1-E2
           type
          Length = 961

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 277 GRYCICSXADVGSXATLVLFGVSDSA-EVGRDSLVLL*YWAVEAPTPAYCSL 125
           G +CICS A   +   +V++G+      VG D+L++L    +    P   S+
Sbjct: 247 GNFCICSIAVGMAIEIVVIYGLQKRGYRVGIDNLLVLLIGGIPIAMPTVLSV 298


>At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative
           (ILL6) / IAA-Ala hydrolase, putative virtually identical
           to gr1-protein from [Arabidopsis thaliana] GI:3559811;
           similar to IAA-amino acid hydrolase GI:3421384 from
           [Arabidopsis thaliana]; contains TIGRfam profile
           TIGR01891: amidohydrolase; contains Pfam profile
           PF01546: Peptidase family M20/M25/M40;  identical to
           cDNA IAA-amino acid conjugate hydrolase-like protein
           (ILL6), partial cds GI:17978837
          Length = 464

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 73  NIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPFRLQLNPTPQTTPMLXNFQHP 252
           N++ ++      SLT     N+P +E++ PN      +PF + L PTP     L    H 
Sbjct: 8   NLLSVSLTIIFVSLTIAT--NLPFFEVKYPN-----NNPFGMLLRPTPIKNQSLGLPAHV 60

Query: 253 XTNKC 267
            +++C
Sbjct: 61  GSDEC 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,347
Number of Sequences: 28952
Number of extensions: 217092
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)