Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0538.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       31   0.88 
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    28   6.2  
03_02_0091 + 5574528-5577254                                           28   6.2  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   8.2  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 25/76 (32%), Positives = 31/76 (40%)
 Frame = +3

Query: 189 PLQCLPRSAFKRNGLQDCQFFQKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHDS 368
           P Q  PR     +G +     +  R A  A P     R+    RR  D PRPAR   H +
Sbjct: 51  PNQRAPRRLIGDHGRKPLTLHEGRREAF-ATPPKSYGRLLGRRRRHRDLPRPARGVDHPA 109

Query: 369 VTLI*CHNGSHLATLR 416
           VTL   H  S    +R
Sbjct: 110 VTLRGLHPSSETGDIR 125


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 89  NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +  K
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRK 595


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 121 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFKR 258
           + L   V  AALW   ++  A  R  VC G +S     K   FF+R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 PPFACILLQSCVLHAAL 156
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,859
Number of Sequences: 37544
Number of extensions: 361660
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)