Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0538.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   3.0  
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    23   9.2  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = -3

Query: 531 PPRNSRLLFSLTDFRFHPFFWSHPPXLRCFHRPTFFSKTVVLRGGY 394
           PP   R   +     F P         +  + PTFF +T  L  G+
Sbjct: 10  PPTRKRYCINSASIEFMPAGSERKDVCKTGYEPTFFLRTFDLNNGF 55


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 165  YKYEDCGPPLQCLPRSAFKRNGLQDCQFFQKVRFATCAVPALVLNR 302
            Y++ D    LQ +  +++  N L DC  +Q++ F   A+   ++ R
Sbjct: 1991 YRFRDRSYLLQAMTHASYSPNRLTDC--YQRLEFLGDAILDYLITR 2034



 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 471  WSHPPXLRCFHRPTFFSKTVVLRGGYHCD 385
            W     L C +RP F  +  + RGG   D
Sbjct: 1545 WLRLHDLYCLNRPFFPERYTIFRGGSQFD 1573


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 230 AISLES*PRQTLERRTAIFIFVTYHRAAWSTHDCSKIQANGGG 102
           A+ L    R  +E+  A ++ + YH + ++T    ++ A+G G
Sbjct: 186 AMELRDRHRMPIEQ-IATWVCIAYHESRFNTSAEGRLNADGSG 227


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,546
Number of Sequences: 2352
Number of extensions: 12693
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)