Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0538.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    30   1.3  
At2g17705.1 68415.m02051 expressed protein                             29   3.9  
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa...    28   5.2  

>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = -3

Query: 609 SPLQPVRRQSCCKPL--RLMQWQL*YIIPPRNSRLLFSLTDFRFHPFFWSHPPXLRCFHR 436
           SP++P+RR   CK L  RL+  +  Y+   +    LF  ++F      W         H 
Sbjct: 474 SPIKPIRRDYVCKVLSSRLVDMERDYVTLDKRYPRLFVPSEFSKVVVNWPKQKLTLSMHT 533

Query: 435 PTFFSKTVVLRGGYHCDIRSKS 370
              F    +  GG   D++S S
Sbjct: 534 AVSFEHDYIEDGG--ADVKSTS 553


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 TTIMCTPCGPMVCYKYEDCGPPL 194
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 676

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 651 WVRIRGSGNARQVGSPLQPVRRQSCCKPLRLMQWQL*YIIPPRNSRLLFSLTDFRFHP 478
           W R    GN+R   S +Q  +  S  + LR  Q    +++ P + RL+  L  F   P
Sbjct: 618 WQRATARGNSRDSSSFVQAYQTPSMAEMLRRSQAM--FLVSPSHHRLIQPLLSFASQP 673


>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 675

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 651 WVRIRGSGNARQVGSPLQPVRRQSCCKPLRLMQWQL*YIIPPRNSRLLFSLTDFRFHP 478
           W R    GN+R   S +Q  +  S  + LR  Q    +++ P + RL+  L  F   P
Sbjct: 617 WQRATARGNSRDSSSFVQAYQTPSMAEMLRRSQAM--FLVSPSHHRLIQPLLSFASQP 672


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,900
Number of Sequences: 28952
Number of extensions: 270953
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)