Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0536.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   1.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.3  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    25   7.2  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   9.5  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 531 LREALQRVTRPQPQLGHRARVQQTLGQMRQLSNVIVIVQLGIS 403
           L+E L+R    + +L H    +  +  +++  NV+V+V  GIS
Sbjct: 126 LKEVLKREVARRIKLPHFNTFEDVVNLLKKAKNVVVLVGAGIS 168


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 396  GHWRCQVEQ*QLHY*VASFVRAS----AVPGHGVQVVAADASHAAGL 524
            GH+  ++ +   +Y +ASF+R       VPG   Q + A  SHAAGL
Sbjct: 867  GHFLRRLRE-YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHAAGL 912


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 51  RYQDSYEWEITLTTK*QVWSGSHHSPEVQ 137
           RY D  E E  LT+   + + SHH+P  Q
Sbjct: 491 RYPDLNELESQLTSHTNITTSSHHNPREQ 519


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 412 KLNNDNYITKLPHLSERLLYPGTVSKLWLRTRHTLQ 519
           + N   ++  L  L + +LYP     +W+  RH  Q
Sbjct: 182 RANGSAFLVALITLRDHVLYPFLSGGMWVFVRHIFQ 217


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 208 TSLERALAFVTTKDQSRSRTW 270
           T LE    FVTT D S  R W
Sbjct: 403 TFLENGKRFVTTSDDSSMRFW 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,920
Number of Sequences: 5004
Number of extensions: 28052
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)