Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0536.Seq
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0067 + 487231-487530,487580-487675,487716-487862                 29   3.1  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   3.1  
03_02_0368 + 7840665-7841975                                           27   9.5  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     27   9.5  

>02_01_0067 + 487231-487530,487580-487675,487716-487862
          Length = 180

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 180 RRPVISQLANFTRESARFCHYKRSKPISNV 269
           R  V+ QL +FT+E AR C     +PI ++
Sbjct: 31  RDSVLLQLPHFTKELARRCQENEGRPIESI 60


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 180  RRPVISQLANFTRESARFCHYKRSKPISNV 269
            R  V+ QL +FT+E AR C     +PI ++
Sbjct: 1993 RDSVLLQLPHFTKELARRCQENEGRPIESI 2022


>03_02_0368 + 7840665-7841975
          Length = 436

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +3

Query: 135 QSSLQIYYNTS*NSVRRPVISQLANFTRESARFCHYKRSKPISNVAWQRA 284
           +++L  Y++ +  +    ++    +++   +RFC  K S+ +S++ W RA
Sbjct: 246 EANLAAYHSIAALTWEEVLLHGTKHYSEGLSRFCDAKMSEVVSSLGWARA 295


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = +2

Query: 434 LLSCLICPSV------CCTRARCPSCGC 499
           L  C IC +V      CC+R  C +CGC
Sbjct: 341 LARCSICGAVALRYSFCCSRILCGTCGC 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,672
Number of Sequences: 37544
Number of extensions: 242844
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)