Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0536.Seq
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12330.1 68414.m01425 expressed protein                             29   2.6  
At2g24370.1 68415.m02912 protein kinase family protein contains ...    28   4.5  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    27   6.0  
At5g52110.1 68418.m06468 expressed protein similar to unknown pr...    27   7.9  
At1g32190.1 68414.m03959 expressed protein                             27   7.9  

>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 207 NFTRESARFCHYKRSKPISNVAWQRA 284
           +F+ E +RFC  K S  +S ++W RA
Sbjct: 367 HFSEEFSRFCDRKMSDVVSMLSWNRA 392


>At2g24370.1 68415.m02912 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 816

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 428 ITLLSCLICPSVCCTRARCPSCGC 499
           + +LSC+  P++      CP CGC
Sbjct: 524 VEVLSCIRHPNMVLLLGACPECGC 547


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
            protein low similarity to SP|P46825 Kinesin light chain
            (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
            TPR Domain
          Length = 1797

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 382  PCSPPVIGDAKLNNDNYIT 438
            P SPPVI DA ++N N IT
Sbjct: 1213 PPSPPVIEDATMDNSNPIT 1231


>At5g52110.1 68418.m06468 expressed protein similar to unknown
           protein (pir||S76150)
          Length = 275

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 351 TIARFVDITGALLASGHWRC--QVEQ*QLH 434
           TIA  + + G L   G+W C  Q+ + QLH
Sbjct: 159 TIAVLISVQGELCVRGYWNCPDQMSKAQLH 188


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 443 CLICPSVCCTRARCPSCGCGRVTRCRASRRR 535
           CL CP   C R+ C   GC     C    RR
Sbjct: 376 CLKCPDTECCRSSCCCSGCFSWLCCCGGGRR 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,707,147
Number of Sequences: 28952
Number of extensions: 164416
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)